PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kalax.0002s0259.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 191aa MW: 20423.9 Da PI: 5.3159 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56 | 1e-17 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr ++ +gr++AeIrdp++ + r++lg+f++ae+Aa+a++ a+ +++g Kalax.0002s0259.1.p 12 TRIRGVRKRP-WGRFAAEIRDPVK---KVRVWLGNFDSAEDAARAYDVAAISFRG 62 579*******.**********644...5***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.39E-31 | 12 | 72 | No hit | No description |
Pfam | PF00847 | 5.5E-11 | 12 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.4E-35 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 14 | 25 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 14 | 72 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-29 | 15 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-8 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MVPVAASDKP ETRIRGVRKR PWGRFAAEIR DPVKKVRVWL GNFDSAEDAA RAYDVAAISF 60 RGSRAKTNFP SSIPSPPAHP FYESEGFVMQ PQRAASSGMS STVESFIGHR SSNPGLVTAR 120 RPASVPNAVR EEGDCRSDCD SSSTMIDYGD GAVDGDVSCS KVVLPFDLNM PPPADADLEG 180 YDLIATALCL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 5e-21 | 15 | 75 | 7 | 68 | ATERF1 |
3gcc_A | 5e-21 | 15 | 75 | 7 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020694474.1 | 1e-44 | ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9FE67 | 2e-27 | ERF80_ARATH; Ethylene-responsive transcription factor 9 | ||||
TrEMBL | A0A0V0HV08 | 8e-46 | A0A0V0HV08_SOLCH; Putative ethylene-responsive transcription factor 3-like | ||||
STRING | Gorai.002G092900.1 | 2e-40 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53170.1 | 2e-21 | ethylene response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | Kalax.0002s0259.1.p |
Publications ? help Back to Top | |||
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