PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0001s0099.1.p
Organism
Kalanchoe marnieriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GRAS
Protein Properties Length: 481aa    MW: 52818.2 Da    PI: 6.0578
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0001s0099.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS318.81.1e-971004751374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevs 88 
                          lv+lL+e+Aea++ g+ ela+ +L rl+elasp++ ++m+Rlaayf  AL+  l + + ++ +     +   e++ ++++aa++l++++s
  Kalax.0001s0099.1.p 100 LVHLLMEAAEALT-GNRELARVILVRLKELASPTDgTNMERLAAYFSDALSGLLEH-GAHTKNVGaGGRGGGEHRPADVIAAFQLLQDMS 187
                          68********997.599*************9998769*****************99.5555555424455555669************** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg...skeeleetgerLakfAeelg 173
                          P++kf+h+taNqaIleav++e+r+Hi+D+di++G+QW++L+qaL +R+egpp  +lRiT++++   +      +++etg+rL  fA+++g
  Kalax.0001s0099.1.p 188 PYVKFGHFTANQAILEAVAQERRIHILDYDIMEGIQWASLMQALVTRKEGPPlpHLRITALSRGGGVgrrCIGTVQETGRRLVAFAASIG 277
                          ************************************************998777*********6555888999***************** PP

                 GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerfleale 262
                          +p++f+    ++ e++++ + ++ +gEal+Vn++l+l ++ ++  ++     ++L+   +l+P+++++ve+e++  ++++F+ rf+++l+
  Kalax.0001s0099.1.p 278 LPLSFHQCKLDSDEAFRPLSVKLARGEALIVNCMLHLPHFSHRAPASVA---SFLSGAETLNPRLITLVEEEVKVaGDGQFAGRFMDTLH 364
                          *******98899999999999*******************865555555...9**********************9************** PP

                 GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352
                          +ysal+dslea++p + ++r+ vE+++lg++i   +a   ++   + e  ++W e+l++ G+ pv++s  + +qa+lll  ++ dgyrve
  Kalax.0001s0099.1.p 365 HYSALYDSLEAGFPMHGRARALVEKVFLGPRIAGSLARIYQM-DVQGEPNRSWWEWLGSRGLMPVRFSFANHCQANLLLGLFN-DGYRVE 452
                          *****************************************9.888999**********************************.****** PP

                 GRAS 353 eesgslv.lgWkdrpLvsvSaWr 374
                          + s+  + +gWk+r+L+++S W+
  Kalax.0001s0099.1.p 453 QLSHNRLgIGWKSRRLLTASIWT 475
                          88655555**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.05174455IPR005202Transcription factor GRAS
PfamPF035144.0E-95100475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAMAMDETPV IDMNMVGMEF STYSNSTTTS LEEETYWTTS CPPVLGWSDV FTAGDADLYG  60
LMESMIHETD SGSPLTSAES RSNLEMAISM DEEEGKGLRL VHLLMEAAEA LTGNRELARV  120
ILVRLKELAS PTDGTNMERL AAYFSDALSG LLEHGAHTKN VGAGGRGGGE HRPADVIAAF  180
QLLQDMSPYV KFGHFTANQA ILEAVAQERR IHILDYDIME GIQWASLMQA LVTRKEGPPL  240
PHLRITALSR GGGVGRRCIG TVQETGRRLV AFAASIGLPL SFHQCKLDSD EAFRPLSVKL  300
ARGEALIVNC MLHLPHFSHR APASVASFLS GAETLNPRLI TLVEEEVKVA GDGQFAGRFM  360
DTLHHYSALY DSLEAGFPMH GRARALVEKV FLGPRIAGSL ARIYQMDVQG EPNRSWWEWL  420
GSRGLMPVRF SFANHCQANL LLGLFNDGYR VEQLSHNRLG IGWKSRRLLT ASIWTSSQQE  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-55884757379Protein SCARECROW
5b3h_A8e-55884756378Protein SCARECROW
5b3h_D8e-55884756378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024166526.10.0nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-178NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A2P6PX630.0A0A2P6PX63_ROSCH; Putative transcription factor GRAS family
STRINGXP_004292683.10.0(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-157GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]