PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp1319s0015.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 384aa MW: 41205 Da PI: 9.3932 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 180 | 229 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Kaladp1319s0015.1.p 180 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 229 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.8E-38 | 180 | 243 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.4E-33 | 180 | 238 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.2E-14 | 180 | 229 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.712 | 180 | 237 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 180 | 238 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 9.8E-12 | 181 | 192 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.74E-14 | 188 | 239 | No hit | No description |
PRINTS | PR00367 | 9.8E-12 | 203 | 219 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MCPFKVANPE DIDYLASRAA SDAAGDENEQ QQRQPGSMLS DYSQAREMSA MVSALTHVVS 60 GQRPSGDQWL YARDSGAGGL LYASSDRQRG FVSSSSGQKR SRMDQQSRAV ASAAPPDDQN 120 IGQSYQRTTF PSSADFGSQP SSSSVASASS TQAAQIATRS SGGNATQNPT VEETGERRRR 180 YRGVRQRPWG KWAAEIRDPH KAARVWLGTF DTAEAAARAY DEAALRFRGN RAKLNFPENV 240 RSVPAPMQIA TGSAPIRTAA ILPDYATVRP SFSPQLQQFR SQPELGEYAQ YSQLLQQGRG 300 GRSGSTSMLD QFVISNLQPP TSTAHGSSSF SGAYPQLLSN EQSHQWGFHG DAGGGTTGLE 360 VIKKSSPPSW TEQSSQYPSS SSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-23 | 179 | 242 | 4 | 68 | ATERF1 |
3gcc_A | 4e-23 | 179 | 242 | 4 | 68 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 175 | 180 | ERRRRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 1e-15 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp1319s0015.1.p |