PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp1109s0010.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 325aa    MW: 36510.5 Da    PI: 8.988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp1109s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.74.2e-27119180159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +dDg+ WrKYGqK+++g  +pr+YYrCt +   +C ++k+v+rs++dp++++itY+g+Hn++
  Kaladp1109s0010.1.p 119 VDDGHGWRKYGQKNIQGVIHPRGYYRCTNRhvqSCLATKQVQRSDQDPTIFHITYRGQHNCT 180
                          59**************************988889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-26110181IPR003657WRKY domain
PROSITE profilePS5081122.159114178IPR003657WRKY domain
SuperFamilySSF1182905.1E-24118180IPR003657WRKY domain
SMARTSM007745.4E-35119181IPR003657WRKY domain
PfamPF031061.7E-24120179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEATRSNRPW EHQALINELK QGRELAKQLR NHLNPSTASS QTRQFLVEKI ISSYEKTLAK  60
LNRSSLPVAP SPSDNNTSSS KNSHKSQGSD HHASKKRKAM PKWTKQVQVK SQTGLEGQVD  120
DGHGWRKYGQ KNIQGVIHPR GYYRCTNRHV QSCLATKQVQ RSDQDPTIFH ITYRGQHNCT  180
KSANPTTQPQ QQPDAQQKRT KLFHTHDSFR FSFGVRKEQM SMSLEEEQMF PTFSSFPATS  240
DSNFSPLYIC PPTSESDFYT PCHVAGFGLS QLNVHRSESD LAETAGSCLN SVLNSPTGVL  300
DLHLDFPTGS ATTDFDSTFL FDFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18119179868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2N9J3961e-80A0A2N9J396_FAGSY; Uncharacterized protein
STRINGPOPTR_0014s09190.16e-80(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-42WRKY family protein