PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0902s0018.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 356aa MW: 39768.7 Da PI: 5.8879 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.5 | 6.6e-29 | 137 | 196 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++ g+++prsYYrCt++ +C ++k+v+rs+edp+v+eitY+g+H++ Kaladp0902s0018.1.p 137 DDGYSWRKYGQKDILGAKYPRSYYRCTYRnikHCGATKQVQRSDEDPTVFEITYKGKHTC 196 8***************************98889*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.068 | 131 | 194 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-28 | 132 | 196 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.4E-25 | 135 | 196 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.3E-38 | 136 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.6E-27 | 137 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MENWEQQTLI NELAQGMELA KQLRSHVGPS STTETREYLV QKILSSYDKA LLILNWSESS 60 SNGQGRWPQL NVAANLLPES PSSFDGSPHS DASDKGFKHQ PQQPEHVNDV SKKRKTQPKW 120 TDHVRIYTEN GLEGPHDDGY SWRKYGQKDI LGAKYPRSYY RCTYRNIKHC GATKQVQRSD 180 EDPTVFEITY KGKHTCVPEC DQNMVPIQQD EEVQRHNNNS NGPKQSHADD ILLHLENTLK 240 VNTEDMSNKE MTRHLPSGST ARTMNANYSA ADFDGSLMQL SSATSGSNNL PVSPFHQNSS 300 FGAGFGTLCC SESDRSDMFS SNASTTNSPY LDLDFTLDPA NPDLTFPFSV PGFFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 4e-18 | 137 | 196 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002304549.1 | 1e-108 | probable WRKY transcription factor 41 | ||||
TrEMBL | A0A3R5WE40 | 1e-113 | A0A3R5WE40_PAELC; WRKY protein | ||||
STRING | POPTR_0003s13840.1 | 1e-108 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 1e-66 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0902s0018.1.p |