PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0864s0009.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24381.7 Da PI: 7.7123 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.8e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkCa+dC++apyf+ +q p++fa++hk+FGasnv+kll ++p ++r da+ ++ yeA+ar+rdPvyG+v++i +lq+q+++ Kaladp0864s0009.1.p 9 PCGACKFLRRKCAPDCIFAPYFCPDQgPERFAAIHKVFGASNVSKLLLHVPVHDRGDAVLTVGYEAQARLRDPVYGCVAHIYALQKQVAC 98 7*********************999889************************************************************** PP DUF260 90 lkaelallkee 100 l+a+l +l+++ Kaladp0864s0009.1.p 99 LQAQLMQLRAQ 109 *****999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.47 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.6E-39 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MASAAAGSPC GACKFLRRKC APDCIFAPYF CPDQGPERFA AIHKVFGASN VSKLLLHVPV 60 HDRGDAVLTV GYEAQARLRD PVYGCVAHIY ALQKQVACLQ AQLMQLRAQM THNNMIQGNK 120 PQNQQWTGTS NNTLSSSMVS RFLGDFETGY NINSSISPPS SIESTTSFDE DNRHNREAML 180 GMPEMWQRQE CAKRQRTSAY CHDEWSELQE LALKMMKD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 3 | 103 | 5 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 3 | 103 | 5 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002521022.1 | 2e-75 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 2e-66 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A2H5QGT0 | 1e-75 | A0A2H5QGT0_CITUN; Uncharacterized protein | ||||
STRING | XP_002521022.1 | 9e-75 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 4e-48 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0864s0009.1.p |