PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0839s0004.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 809aa    MW: 90327.1 Da    PI: 8.7619
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0839s0004.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.11.8e-076646951953
                  AP2  19 IrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                          Irdp   g++ r++lg+f+tae+A + ++aa++++
  Kaladp0839s0004.1.p 664 IRDP---GRKSRVWLGTFDTAEDATRSYDAAALEF 695
                          7886...546**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5147319.18628131IPR002902Gnk2-homologous domain
PfamPF016576.1E-2135128IPR002902Gnk2-homologous domain
PROSITE profilePS5147317.991136243IPR002902Gnk2-homologous domain
PfamPF016571.4E-10149239IPR002902Gnk2-homologous domain
Gene3DG3DSA:2.60.120.2003.0E-15249349IPR013320Concanavalin A-like lectin/glucanase domain
SuperFamilySSF561124.18E-75324585IPR011009Protein kinase-like domain
PROSITE profilePS5001137.432343640IPR000719Protein kinase domain
SMARTSM002204.4E-28343599IPR000719Protein kinase domain
PfamPF077143.0E-47344542IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE patternPS001070349371IPR017441Protein kinase, ATP binding site
CDDcd140661.76E-86349598No hitNo description
Gene3DG3DSA:3.30.200.209.7E-26350407No hitNo description
Gene3DG3DSA:1.10.510.102.3E-40408543No hitNo description
PROSITE patternPS001080464476IPR008271Serine/threonine-protein kinase, active site
PROSITE profilePS5103212.47648708IPR001471AP2/ERF domain
SMARTSM003803.4E-4651713IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-12654696IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-7663695IPR016177DNA-binding domain
CDDcd000187.02E-12664695No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 809 aa     Download sequence    Send to blast
MAPEYVMHGR FIVESDVYIF VTFCAQDENY LNQKCSGANY TSNSIYQKNL NTLLSFLSSN  60
NDIDYGFYNF SEGEGIDRVN SIALCRGDIS QNSCKRCISY STTDLPQRCP IQKEAIVWYD  120
NCMLRYSNRY IFGSWEQPDN LSWDLVNVTD PNLFTQALIG LLTGLQKQAS SGDSQKKFAI  180
GDTSYANSTR IYGLVQCTPD LTEVQCHDCL NVTFTAITGQ LFGRPRGRVL GPSCNFRYAM  240
NQFYEIPPPA SPPPATAPSP PTPTTIVPPT GEGSDKVRNI IIGIVSTVCS VMLIICIFIF  300
LRVRKRKEKG QHNFLLTDAH DDITSTESLQ FKFETIKVAT DNFKKDNKLG QGGFGSVYKG  360
KLVEGKEIAV KRLATNSGQG DLEFKNEVGI VAKLQHRNLV RLLGFCLEGN ERLLIYEFVP  420
NSSLDRFLFD PLKRACLDWE TRYKIIGGIA KGLLYLHEDS RLRIIHRDLK AGNILLDEEM  480
CPKIADFGMA RLFILNETQG DTNRIVGTYG YMAPEYAMHG KFSVKSDVYS FGILLLEIIS  540
GQKYNRFCIG GEPYELTSFA WDSWKVGTAT NMIDPTIFSG PRNDILRIIH IGLLCVAYLA  600
TIESEKTITS GSAGFLPFNQ SNLHHVHLES SSAGFRHALF LDGGEDGGGG GAFQRSEEAA  660
VRAIRDPGRK SRVWLGTFDT AEDATRSYDA AALEFSLTGA AAKSLTTPAR AASSNPARRR  720
LVSNWGRRSA LTASSFSFSR CCLRTVRVII TIRLSGIKPS SFNLTPLWVP RTNRFHLTRF  780
RFAPRQRMYT PSRFISNPRL QTLTPRQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh4_A1e-5633054331245Protein BRASSINOSTEROID INSENSITIVE 1
4oh4_B1e-5633054331245Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_A2e-5633054331245Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B2e-5633054331245Protein BRASSINOSTEROID INSENSITIVE 1
5lpb_A4e-573305436220Protein BRASSINOSTEROID INSENSITIVE 1
5lpv_A4e-573305436220Protein BRASSINOSTEROID INSENSITIVE 1
5lpw_A4e-573305436220Protein BRASSINOSTEROID INSENSITIVE 1
5lpy_A4e-573305436220Protein BRASSINOSTEROID INSENSITIVE 1
5lpz_A1e-563305436220Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303308RKRKEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020966846.10.0cysteine-rich receptor-like protein kinase 29
RefseqXP_025675579.10.0cysteine-rich receptor-like protein kinase 29
SwissprotQ8S9L61e-178CRK29_ARATH; Cysteine-rich receptor-like protein kinase 29
TrEMBLA0A445BFF70.0A0A445BFF7_ARAHY; Uncharacterized protein
STRINGGLYMA20G27510.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.28e-18WRKY family protein
Publications ? help Back to Top
  1. Chen Z
    A superfamily of proteins with novel cysteine-rich repeats.
    Plant Physiol., 2001. 126(2): p. 473-6
    [PMID:11402176]
  2. Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R
    Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography.
    Proteomics, 2004. 4(2): p. 397-406
    [PMID:14760709]
  3. Chen K,Fan B,Du L,Chen Z
    Activation of hypersensitive cell death by pathogen-induced receptor-like protein kinases from Arabidopsis.
    Plant Mol. Biol., 2004. 56(2): p. 271-83
    [PMID:15604743]
  4. Wrzaczek M, et al.
    Transcriptional regulation of the CRK/DUF26 group of receptor-like protein kinases by ozone and plant hormones in Arabidopsis.
    BMC Plant Biol., 2010. 10: p. 95
    [PMID:20500828]
  5. Yadeta KA, et al.
    A Cysteine-Rich Protein Kinase Associates with a Membrane Immune Complex and the Cysteine Residues Are Required for Cell Death.
    Plant Physiol., 2017. 173(1): p. 771-787
    [PMID:27852951]