PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0822s0027.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 166aa MW: 19176.1 Da PI: 11.0029 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.9 | 1.5e-07 | 99 | 116 | 38 | 55 |
TS-HHHHHHHHHHHHHHH CS Homeobox 38 gLterqVkvWFqNrRake 55 +++ ++V++WFqN++a+e Kaladp0822s0027.1.p 99 KIEGKNVFYWFQNHKARE 116 89**************97 PP | |||||||
2 | Wus_type_Homeobox | 49.8 | 7.9e-17 | 92 | 119 | 37 | 64 |
Wus_type_Homeobox 37 aeLeeyGkiedkNVfyWFQNrkaRerqk 64 +L++yGkie+kNVfyWFQN+kaRe qk Kaladp0822s0027.1.p 92 LQLRRYGKIEGKNVFYWFQNHKARECQK 119 58***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.26E-6 | 65 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.2E-5 | 98 | 116 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MHRGGFSRQQ PILSFNARKP RPLIPKPSTS TFPTHPNSFN QHAHCDTTNF FSTNHHISRI 60 NSCCSNLYSV VVSSSRWNPT PEQLRALEDR ALQLRRYGKI EGKNVFYWFQ NHKARECQKR 120 RRQQLENSSS SPKNDQQQTP HHHQNQQTKD QPAGNSHHQS SSTHN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021909295.1 | 3e-29 | WUSCHEL-related homeobox 1 isoform X1 | ||||
Refseq | XP_021909296.1 | 2e-29 | WUSCHEL-related homeobox 1 isoform X2 | ||||
Refseq | XP_028097223.1 | 1e-29 | WUSCHEL-related homeobox 4-like | ||||
Swissprot | Q6X7K0 | 6e-21 | WOX1_ARATH; WUSCHEL-related homeobox 1 | ||||
TrEMBL | A0A1Q3CUD0 | 3e-28 | A0A1Q3CUD0_CEPFO; Homeobox domain-containing protein | ||||
STRING | evm.model.supercontig_3.402 | 9e-29 | (Carica papaya) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 3e-23 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0822s0027.1.p |
Publications ? help Back to Top | |||
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