PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0808s0020.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ARR-B | ||||||||
Protein Properties | Length: 508aa MW: 56026.1 Da PI: 5.4634 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 88 | 8.9e-28 | 304 | 358 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++Wt++LH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++ Kaladp0808s0020.4.p 304 KMKVDWTSDLHKKFVQAVEQL-GVDQAIPSRILELMKVEGLTRHNVASHLQKYRMH 358 5689*****************.********************************96 PP | |||||||
2 | Response_reg | 24.7 | 1.2e-09 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+ d++ + ++ +r+ le +y +v ++ + +eal + ++ +++ ++ ++++G +k +++++ lp i+ + + +++ + Kaladp0808s0020.4.p 20 VLLLDKDANYASEIRSKLEGMDY-IVSTFCNEDEALSAVLNESevFHVAIVE--VSTVEGNGNFKFLQKAK-VLPTIMTASVQCLTTTMK 105 8999*******************.***************877778*****87..67888888999999988.999999888888****** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 ++ +Ga ++l Kp ++++l++ Kaladp0808s0020.4.p 106 CIALGAIEVLNKPLSEDKLRN 126 ******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.2300 | 7.7E-14 | 16 | 161 | No hit | No description |
SuperFamily | SSF52172 | 1.27E-11 | 16 | 132 | IPR011006 | CheY-like superfamily |
PROSITE profile | PS50110 | 17.36 | 19 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 9.3E-6 | 20 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS51294 | 13.671 | 301 | 360 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-27 | 301 | 360 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.86E-18 | 302 | 360 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.7E-25 | 304 | 358 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.9E-7 | 307 | 356 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MVCTANDLLE WEDFPKGLRV LLLDKDANYA SEIRSKLEGM DYIVSTFCNE DEALSAVLNE 60 SEVFHVAIVE VSTVEGNGNF KFLQKAKVLP TIMTASVQCL TTTMKCIALG AIEVLNKPLS 120 EDKLRNIWQH VVHKAYNAGD SAVAESPRQV KEEELHDKLL EEMPCMSVEG CDDEHDRSSG 180 NDKYPAPSTP QLKQVRLLDD ASCHDQTNWS AEKGSAEHCE ESKSVETTCC NAAPDMPVVE 240 AGELLHESVV KEENDSADGC KSESDTSPHQ KNVPETGSLG GNARMQTKAS ESRGPCGAKT 300 NRKKMKVDWT SDLHKKFVQA VEQLGVDQAI PSRILELMKV EGLTRHNVAS HLQKYRMHRR 360 HALPNREERR ISAYPMWVQP GSHTAGLQAW GPPGPPYQTW PWKSYAAMQA DAWGCPVMPP 420 LQHGSYSYYP QNSASGYYGG VDNTGHTMTT NSPDDRLLAD EVIDRVVKEA ISKPWLPLPL 480 GLKPPSTESV LSELSKQGIS NIPPPSH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-16 | 300 | 357 | 1 | 58 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002279150.1 | 0.0 | PREDICTED: two-component response regulator-like APRR2 isoform X1 | ||||
Swissprot | Q6LA43 | 1e-126 | APRR2_ARATH; Two-component response regulator-like APRR2 | ||||
TrEMBL | A0A438JZR0 | 0.0 | A0A438JZR0_VITVI; Two-component response regulator-like APRR2 | ||||
STRING | VIT_02s0012g00570.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18020.6 | 1e-128 | ARR-B family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0808s0020.4.p |
Publications ? help Back to Top | |||
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