PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0630s0072.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 192aa MW: 20208.2 Da PI: 9.8856 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.7 | 8.2e-43 | 22 | 122 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.CvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C+kd C++apyfpae+p kfa vh++FGasnv k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq++ Kaladp0630s0072.1.p 22 PCAACKLLRRRCSKDeCAFAPYFPAEDPVKFATVHRVFGASNVNKMLQDLPAQHRGDAVSSLVYEANARVRDPVYGCVGAISALQQQIHV 111 7***********9977************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+lal+++e Kaladp0630s0072.1.p 112 LQAQLALTQAE 122 ******99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.811 | 21 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.9E-42 | 22 | 120 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MKQERSAAAP LKKGVPAVVA TPCAACKLLR RRCSKDECAF APYFPAEDPV KFATVHRVFG 60 ASNVNKMLQD LPAQHRGDAV SSLVYEANAR VRDPVYGCVG AISALQQQIH VLQAQLALTQ 120 AEVLHLRSLS ASQAAAALRK TGDVITSPTA AVHHPHGSAL VPSSTSSLPA SKLAASDTAK 180 SSFLAADRSW W* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-44 | 22 | 124 | 11 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-44 | 22 | 124 | 11 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024968047.1 | 6e-62 | LOB domain-containing protein 4-like | ||||
Swissprot | Q9SA51 | 6e-55 | LBD3_ARATH; LOB domain-containing protein 3 | ||||
TrEMBL | A0A124SHQ0 | 1e-60 | A0A124SHQ0_CYNCS; Lateral organ boundaries domain-containing protein | ||||
STRING | XP_010667079.1 | 3e-60 | (Beta vulgaris) | ||||
STRING | Gorai.010G170700.1 | 3e-60 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 2e-50 | ASYMMETRIC LEAVES 2-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0630s0072.1.p |
Publications ? help Back to Top | |||
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