PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0605s0003.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 23790.9 Da PI: 9.0527 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.9 | 1.9e-34 | 10 | 104 | 1 | 95 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 aCaaCk++r++C ++C+lapyfp++++++f++vhk+FG sn++k++++l+ee++++a++sl++eA +r++dPv G +g +++l +l+ Kaladp0605s0003.2.p 10 ACAACKHQRKRCDEKCILAPYFPSDRAREFQAVHKVFGLSNLQKMVRSLSEEDKRRATDSLIWEAFCRQKDPVLGPYGEYRRLFDELKLY 99 7***************************************************************************************99 PP DUF260 91 kaela 95 k++l+ Kaladp0605s0003.2.p 100 KSQLQ 104 99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.367 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-33 | 10 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MERGSATRTA CAACKHQRKR CDEKCILAPY FPSDRAREFQ AVHKVFGLSN LQKMVRSLSE 60 EDKRRATDSL IWEAFCRQKD PVLGPYGEYR RLFDELKLYK SQLQLPIQVS NFGTNNINGA 120 VTDHQFGTPN NNNVALLNYV QKNAGFASNQ FTCSPHHKSP KGQGEIGSII LPLQQRHLVN 180 GYNQQYCVKG QFSPMNGEAT TMESITWEGG S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-18 | 11 | 103 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-18 | 11 | 103 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010688578.1 | 2e-61 | PREDICTED: LOB domain-containing protein 2 | ||||
STRING | XP_010688578.1 | 7e-61 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 6e-47 | LOB domain-containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0605s0003.2.p |