PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0577s0016.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 487aa    MW: 52692.3 Da    PI: 9.1207
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0577s0016.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32204259359
                          -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers  d+++ ei+Y+geHnh 
  Kaladp0577s0016.1.p 204 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSF-DGHIAEIVYKGEHNHA 259
                          9***************************************.***************7 PP
2WRKY104.36.5e-33405462259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           Dgy+WrKYGqK+vkg+++prsYYrCts +C+v+k+ver++edp  +++tYeg+Hnhe
  Kaladp0577s0016.1.p 405 GDGYRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKHVERASEDPGSFITTYEGKHNHE 462
                          6********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-29195261IPR003657WRKY domain
SuperFamilySSF1182901.83E-25201261IPR003657WRKY domain
SMARTSM007742.7E-36202260IPR003657WRKY domain
PfamPF031067.6E-25204258IPR003657WRKY domain
PROSITE profilePS5081123.399204261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.2E-34391464IPR003657WRKY domain
SuperFamilySSF1182901.57E-28398464IPR003657WRKY domain
PROSITE profilePS5081134.589399464IPR003657WRKY domain
SMARTSM007745.9E-38404463IPR003657WRKY domain
PfamPF031061.2E-25406462IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MEIKEAAADR VVIAKPVASK PTCSAYRSFS ELLAGAINDS SPPRDPAVAA AIRPKTVRVA  60
KPTPTPAAQP PPSVSQSRAE VSRAAAPGPG QSLDTLLATD TKTSVVYKPL AKVVSKSTVS  120
LLANMGNFDK SPQPSQVEPR PQQLLRPQGW YLRSNQGPQS GTSSQPEPSR LPETSRGQPS  180
SQNTEEDENS VIPAVANVDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE  240
RSFDGHIAEI VYKGEHNHAK PQPPKKNTPA AAAQANGSEG TGQDFGANIN SSQYLNDARH  300
EASDIRLENQ NETLRSSAIP AYHASNPALS FDNVANAGLG TPENSCGVSG EHEELSKGID  360
ADEEEPKSKR RKSEVQPIDP AGPSGHTMQV PKIVVQSSTD NEIVGDGYRW RKYGQKVVKG  420
NPYPRSYYRC TSLKCNVRKH VERASEDPGS FITTYEGKHN HEMPARADTQ AASEQGSQSQ  480
ASKDIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-31204465878Probable WRKY transcription factor 4
2lex_A1e-31204465878Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021289195.11e-175WRKY transcription factor 44 isoform X1
TrEMBLA0A1Q1MMC81e-169A0A1Q1MMC8_VITVI; Transcription factor WRKY26
TrEMBLF6HQV71e-170F6HQV7_VITVI; Uncharacterized protein
STRINGXP_009342023.11e-172(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.12e-86WRKY family protein