PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0550s0008.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 409aa    MW: 45483 Da    PI: 7.002
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0550s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM155.32.7e-48221463128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          pGfrF+Ptd+el+++yL++k+eg + ++ evi+evdi+++ePwdLp k+v ++++ew+fFs+r +ky++g +++r+t+ gyWkatgk+++
  Kaladp0550s0008.1.p  22 PGFRFSPTDDELISYYLRQKMEGFEKSV-EVIPEVDICRHEPWDLPgKSVIQSDSEWFFFSPRGRKYPNGCQSKRTTEFGYWKATGKERN 110
                          9************************999.99***************777777899*********************************** PP

                  NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          v+s + +++g+k+tLvf+ grapkg++t+W+mhey +
  Kaladp0550s0008.1.p 111 VKS-NANVIGTKRTLVFHLGRAPKGRRTEWIMHEYCM 146
                          ***.999****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-5515161IPR003441NAC domain
PROSITE profilePS5100552.99520162IPR003441NAC domain
PfamPF023659.6E-2522145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MGDISSSGEA QMSLVAASAR FPGFRFSPTD DELISYYLRQ KMEGFEKSVE VIPEVDICRH  60
EPWDLPGKSV IQSDSEWFFF SPRGRKYPNG CQSKRTTEFG YWKATGKERN VKSNANVIGT  120
KRTLVFHLGR APKGRRTEWI MHEYCMHGSS QDSLVVCRIR KNSDFCMSGS SHQDSASQGR  180
GLSMTSDNTN QAGFADVRSH PDGHMVGDGC LVVSDGERVD DGSSRKCNSS HDSYSIEQNG  240
DGFESDRKAP HEVSQPTSSS CHKDCNNDDF YAEILNDDIV KLFDESSLTT SPNHHPLVST  300
IFDSRTEQLP VTTATSSMGP KQGIARRRIR FDMTKLDIDE LEMHLNPPER PSVVSKFTAG  360
KLSGKLTLIL LIVATLLALC LWYPVTEMKH TACASLCKDP RARSVKSW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-432216219165NO APICAL MERISTEM PROTEIN
1ut4_B5e-432216219165NO APICAL MERISTEM PROTEIN
1ut7_A5e-432216219165NO APICAL MERISTEM PROTEIN
1ut7_B5e-432216219165NO APICAL MERISTEM PROTEIN
3swm_A5e-432216222168NAC domain-containing protein 19
3swm_B5e-432216222168NAC domain-containing protein 19
3swm_C5e-432216222168NAC domain-containing protein 19
3swm_D5e-432216222168NAC domain-containing protein 19
3swp_A5e-432216222168NAC domain-containing protein 19
3swp_B5e-432216222168NAC domain-containing protein 19
3swp_C5e-432216222168NAC domain-containing protein 19
3swp_D5e-432216222168NAC domain-containing protein 19
4dul_A5e-432216219165NAC domain-containing protein 19
4dul_B5e-432216219165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015872645.11e-120NAC domain-containing protein 40-like
TrEMBLA0A2P5DZX91e-114A0A2P5DZX9_PARAD; NAC domain containing protein
STRINGGorai.006G113700.11e-111(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-86NTM1-like 8