PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0488s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 684aa MW: 78487.4 Da PI: 7.9421 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.8 | 2.7e-21 | 76 | 159 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF vr+++s +++++e + + ++Cs +g+++ ++ + r r+etrtgC a++++++ ++++w++ ++ l+HnH l Kaladp0488s0024.1.p 76 NYYNCYAKEAGFCVRVKNSWFKRNSKEKYGAVLCCSSQGFKRIKDVN-----RLRKETRTGCPAMIRMRLVDSKRWRIVEVTLDHNHLL 159 69*****************************************9988.....99*********************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.5E-19 | 76 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-30 | 278 | 371 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.693 | 565 | 601 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 8.3E-5 | 576 | 603 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 684 aa Download sequence Send to blast |
MEVISLGSEQ VLDIESNEAG LEREGGVVEL DGQSYKSLER DGLSELDGEN AACQPRKEFV 60 APAVGMEFES YDDVYNYYNC YAKEAGFCVR VKNSWFKRNS KEKYGAVLCC SSQGFKRIKD 120 VNRLRKETRT GCPAMIRMRL VDSKRWRIVE VTLDHNHLLG SRVHKSVKRL TNCTKRKLNS 180 NSDAEVRTIK LYHALVVDAG GDGSCNVIGR EARTQSSKPD QLCLKKGDSQ SVYNYFCRMQ 240 MSNSNFFHSV DFNVDGLLRN VFWADARSRA ACGYFGDVVR FDSTYLSSKY ETPLVTFVGL 300 NHHGQSVLLG CGLLSNETTE SYVWIFKTWA ACMNGHTPQT IITDRCLCLQ TAISQVFPRS 360 HHRFGLFDIM RRVPEKLGGL RNYDAIRKAL FKAVYETLKV GEFEGAWGFM VHHFGVADNE 420 WLQSLYKDRV LWAPVCLKDT FFAGIAAASQ GDNISPFFDK YVHKQTPLKE FLDKYEFAVQ 480 KKHKEESLAD IESRNWTPIL KSRCSFELQV SKAYTKEMFN KFQFEVEEMY SCFSTMQLHV 540 NGPITIFLVK ERILVEGNRR EIRDFEVMYN RSASEVRCIC SCFNFNGYLC RHSLCVLNFN 600 GVEEIPSKYI LPRWRKDYKR VYIPISCSNG LNLTDQAQFF NQLYRSALQV VEEGVVSFDH 660 YKVALEAFEE SLNRIHGLEE KLD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002263979.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_019077918.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_019077919.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_019077920.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_019077921.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A2N9G4Y6 | 0.0 | A0A2N9G4Y6_FAGSY; Uncharacterized protein | ||||
STRING | VIT_09s0002g07400.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0488s0024.1.p |
Publications ? help Back to Top | |||
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