PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0476s0019.5.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 517aa    MW: 54784.7 Da    PI: 5.8923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0476s0019.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.3e-09339387355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Kaladp0476s0019.5.p 339 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 387
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.11E-17334404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-11334391No hitNo description
PROSITE profilePS5088815.485336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16337403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6339387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10342392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MTDDNKFETE KRPEDSMNYH PSHMSSDWAY DIIPGSSMGL DSSAACEGGS VIGSSSCPSD  60
PMMISGPDSW NRSVVGSSVG GFCGIDVGNS AGSFSMLEQL RGSGELMRPM FDGGWNPKGG  120
LFLPNGPGLP PRSLSQFPSD SGFIERAARF SCFGSGSFSD MVSPFAAPES VSPLARGPSI  180
VDGSRPLAFE NEVIMAGAST SGGRNGSLSR NQSVARSLDE SRQGRGASSN ESDEANFGGG  240
DGREGPSMLE AAGGETCPAR GHSANKRKRA GQSARANKSN GASPKSVDGA KPGGERSEQK  300
PSPGSNTKAP EKPEQKSQGT DPPKEEYIHV RARRGQATNS HSLAERVRRE KISERMKFLQ  360
DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLSTV NPRLDFDIES LLTKDMFQPR  420
AGSSSTSGFP SDTCMGYQHQ ITSLSAQFQA GVPISGSSMG AHLAVMGFKE PNSQLANMWD  480
DELHNVVHMG FGNSSEPSKS QELNDSLQSG PMKPEP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007225728.11e-150transcription factor bHLH49 isoform X2
TrEMBLM5XLG41e-148M5XLG4_PRUPE; Uncharacterized protein
STRINGEMJ269271e-149(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.32e-90bHLH family protein