PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0457s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 642aa MW: 69417.6 Da PI: 9.6058 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16 | 3.4e-05 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Kaladp0457s0011.1.p 73 FICEVCNKGFQREQNLQLHRRGH 95 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.0005 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Kaladp0457s0011.1.p 149 WKCEKCSKKYAVQSDWKAHSKTC 171 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-6 | 72 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.38E-7 | 72 | 95 | No hit | No description |
Pfam | PF12171 | 3.2E-5 | 73 | 95 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.0052 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 73 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 130 | 114 | 144 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.0E-5 | 137 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.38E-7 | 144 | 169 | No hit | No description |
SMART | SM00355 | 140 | 149 | 169 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 642 aa Download sequence Send to blast |
MSSFFGGARE DDQSHHHLQM LQQQQLQPQQ QQQNSSSLPA PQGKKKRNLP GTPNPDAEVI 60 ALSPKSLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKSNKEVK KKVYLCPEPT 120 CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT CGTREYRCDC 180 GTLFSRRDSF ITHRAFCDAL AQESARHPTG LSSIGSHIYG ASASRSSLGL DFQVGTQMQS 240 NNMLRLGNAM EPAKFDHHSL TMPPNNSNPF GQHQQMPSPS SIFMNDPNTN QGGFQEQSHQ 300 QGLMIPNKAL FHGMMNLSDH HDQSPNSASA SSMFNLGFYP NGTPNRSMNN NPSNSSNNNM 360 SSSSGFLSSD DQFNIGISAN NVSGGGGSQP TSTNLFSSTL GNNLSSGNLN SIYGNPSLQH 420 ENLTPHMSAT ALLQKAAQIG STSSASNSST LLRGLAVSSN PAAKSDSAQQ LISPAGNISG 480 SSNSSRTAFA PNGGTLKPAL MDNDTHFQGL INSLTNGSSS IFGDQNSYTG FGDADQNNNN 540 MGLDRNLHQQ QLNNNASFGS SAEANKLQQN LVRGSDKLTL DFLGVGGIVR NNMNAASAAA 600 ASGFLHREQQ QQQLQQNQQG VDGRSLESAR ANLPFGSAKF H* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-35 | 145 | 206 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 8e-35 | 145 | 206 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022735225.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
Refseq | XP_022735226.1 | 0.0 | protein indeterminate-domain 5, chloroplastic-like | ||||
TrEMBL | A0A061EG08 | 0.0 | A0A061EG08_THECC; Indeterminate(ID)-domain 5, putative isoform 2 | ||||
STRING | EOY01198 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G02070.1 | 2e-96 | indeterminate(ID)-domain 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0457s0011.1.p |