PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0442s0032.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 358aa    MW: 38976.7 Da    PI: 6.8938
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0442s0032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.41.3e-14264288226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ktelC+ +++tG C+yGd C+FaHg
  Kaladp0442s0032.1.p 264 KTELCNKWQETGSCPYGDHCQFAHG 288
                          8***********************8 PP
2zf-CCCH17.85.9e-06301325125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          ykte Cr  +++  C+yG rC+F H
  Kaladp0442s0032.1.p 301 YKTEVCRMVLAGDPCPYGHRCHFRH 325
                          9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.6E-19257295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-11259294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061262290IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-8262289IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-11264288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-11296329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-8296331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821300328IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4300327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MENESSNDAH GSYDLISQDS EVFSSSLYSM FTPIQKLSVS PSDSSTTTNS NSSQSPNDSY  60
SNEKTMAAAT TKQALSFIVQ NHQDLVNRHN LCLNHLREAS REAEALRREN ASLRILNREL  120
NDRLALMIQS ALPPRSLSPN FQEVSLMHGF GGLCIGGDSA GGRDGFVESP SPTSVMENNV  180
MEMPMEPVRI ALPKSISVRS DGYLKTNPGS AKSGAAGGGD NRARSSTRVP VADPVSGKQK  240
VYVQGGKKEG EAVELEVYNQ GMVKTELCNK WQETGSCPYG DHCQFAHGIE ELRPVLRHPR  300
YKTEVCRMVL AGDPCPYGHR CHFRHALTEQ EKLMMSALPE AQAGLFASPP ITSNKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22264329570Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010662958.11e-108PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-81C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A438C1A01e-107A0A438C1A0_VITVI; Zinc finger CCCH domain-containing protein 15
TrEMBLD7T8Y61e-106D7T8Y6_VITVI; Uncharacterized protein
STRINGVIT_01s0011g04260.t011e-107(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.23e-60C3H family protein