PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0266s0005.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB

Protein Properties

Length: 273aa MW: 30596.8 Da PI: 10.5322

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0266s0005.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.4e-17	56	101	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd++l ++vk+ G ++W++ + m+ Rt+k+c++rw+++l Kaladp0266s0005.1.p 56 RGPWSPEEDDQLRKLVKKNGRRNWSKLGSFMN--RTGKSCRLRWHNHL 101 89***************************7..**********97 PP
2	Myb_DNA-binding	49.3	1.1e-15	112	154	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + T++Ed+ +v +k+ G++ W++Ia++++ gRt++q+k+rw++ Kaladp0266s0005.1.p 112 PITPQEDKVIVTMHKRVGNR-WSLIAQKLP-GRTDNQVKNRWNST 154 67****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	26.762	51	105	IPR017930	Myb domain
SuperFamily	SSF46689	1.61E-29	54	151	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.6E-20	54	103	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-17	55	103	IPR001005	SANT/Myb domain
Pfam	PF00249	3.5E-16	56	101	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-13	58	101	No hit	No description
SMART	SM00717	8.8E-14	109	157	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	18.727	111	159	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-21	111	156	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-13	111	154	IPR001005	SANT/Myb domain
CDD	cd00167	6.26E-11	112	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAPYFWLANR NGEEKENEKE KDRILGDRWW WPGDDISAVE GEISENGEEG GDKLRRGPWS 60 PEEDDQLRKL VKKNGRRNWS KLGSFMNRTG KSCRLRWHNH LKPGVVPVTL GPITPQEDKV 120 IVTMHKRVGN RWSLIAQKLP GRTDNQVKNR WNSTLRRRRQ HALNQQQQRK ATGRATAPWA 180 NRVKPGPDLG GGCGSLAGPG RVSGPERLQY FGCIEGARSL MHPVSPPEPE VRPFPCMAPP 240 APASEPSSVI AQLKGVVEGI CQEELKLRNS ML*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	7e-30	54	158	2	104	MYB PROTO-ONCOGENE PROTEIN
1mse_C	8e-30	54	158	2	104	C-Myb DNA-Binding Domain
1msf_C	8e-30	54	158	2	104	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001147631.1	9e-34	uncharacterized protein LOC100281240
TrEMBL	A0A3L6ENE5	2e-32	A0A3L6ENE5_MAIZE; Transcription factor MYB44
TrEMBL	B4FMQ3	2e-32	B4FMQ3_MAIZE; MYB transcription factor
STRING	GRMZM2G145444_P01	3e-33	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	6e-32	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Kaladp0266s0005.1.p