PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0192s0010.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 372aa MW: 41677.2 Da PI: 6.5977

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0192s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.3	4.3e-51	23	148	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 pGfrF Ptdeelv++yL++kve+k++++ + ik++diyk++PwdLpk+ + +++ewyfF+kr +ky+++ r+nr+t sg+Wkatg dk+ Kaladp0192s0010.1.p 23 LPGFRFYPTDEELVDFYLRRKVEKKPFSI-DLIKQIDIYKYDPWDLPKTSTVGDNEWYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKP 111 59*************************.99***********888889********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s++++l glkk+Lv+y+g+a kg+ktdW+mhe+rl Kaladp0192s0010.1.p 112 IHSSSSSLLGLKKSLVYYRGNAGKGTKTDWMMHEFRL 148 *********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-54	22	188	IPR003441	NAC domain
PROSITE profile	PS51005	52.833	22	188	IPR003441	NAC domain
Pfam	PF02365	5.3E-25	24	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MEACIDDTIM SSDEREEDDE SQLPGFRFYP TDEELVDFYL RRKVEKKPFS IDLIKQIDIY 60 KYDPWDLPKT STVGDNEWYF FCKRGRKYRN SVRPNRVTGS GFWKATGIDK PIHSSSSSLL 120 GLKKSLVYYR GNAGKGTKTD WMMHEFRLPA PLDFITHNTP PPPHPIITAD STDTQDAEVW 180 TVCRIFKRNV PSRKYTSNWR EISTQRNPSS SSSSSMGSMA AGSSNSSSAP ACTSTTANHN 240 DHKNKSPNYI CFTSNITTAG NDQQKTAALI QNPNYNNTSS HGDGMSRLTT VPAARLGHEQ 300 CSPKPFSYNP MMQIQITNMP PTTPAPSSHP CAESSSVSPM DITLNEGLNT DQFATNESWD 360 ELGQFWNLFQ E*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MEACIDDTIM SSDEREEDDE SQLPGFRFYP TDEELVDFYL RRKVEKKPFS IDLIKQIDIY  60
KYDPWDLPKT STVGDNEWYF FCKRGRKYRN SVRPNRVTGS GFWKATGIDK PIHSSSSSLL  120
GLKKSLVYYR GNAGKGTKTD WMMHEFRLPA PLDFITHNTP PPPHPIITAD STDTQDAEVW  180
TVCRIFKRNV PSRKYTSNWR EISTQRNPSS SSSSSMGSMA AGSSNSSSAP ACTSTTANHN  240
DHKNKSPNYI CFTSNITTAG NDQQKTAALI QNPNYNNTSS HGDGMSRLTT VPAARLGHEQ  300
CSPKPFSYNP MMQIQITNMP PTTPAPSSHP CAESSSVSPM DITLNEGLNT DQFATNESWD  360
ELGQFWNLFQ E*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-50	15	194	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-50	15	194	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-50	15	194	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-50	15	194	7	171	NO APICAL MERISTEM PROTEIN
4dul_A	9e-50	15	194	7	171	NAC domain-containing protein 19
4dul_B	9e-50	15	194	7	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027061099.1	1e-100	transcription factor JUNGBRUNNEN 1-like
Refseq	XP_027172552.1	1e-100	transcription factor JUNGBRUNNEN 1
Swissprot	Q9SK55	2e-80	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A068UZ64	2e-95	A0A068UZ64_COFCA; Uncharacterized protein
STRING	cassava4.1_033023m	3e-92	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-71	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	Kaladp0192s0010.1.p

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]