PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0167s0008.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | FAR1 | ||||||||
Protein Properties | Length: 671aa MW: 76767.9 Da PI: 6.5421 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.5 | 2.9e-20 | 62 | 144 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn YAk+ GF vr+s++ ++ +++e ++ ++ Cs g++++++ + r+r+etrtgC a++k +++++ +w++++ eleHnH ++ Kaladp0167s0008.1.p 62 FYNCYAKDQGFGVRVSNTWYR-KSREKYRGKLSCSSAGYKRRSEAN-----RPRPETRTGCPAMIKFRLMESCRWRIIEAELEHNHLIS 144 9***************99997.66669*************998888.....***********************************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-17 | 62 | 144 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-26 | 263 | 356 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.421 | 550 | 586 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.2E-6 | 561 | 588 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MDQVSLNSEP VNEDEAADGY EVEEDGDLGI NGGETSLLIQ GENPIAPAVG MEFETYEDVY 60 YFYNCYAKDQ GFGVRVSNTW YRKSREKYRG KLSCSSAGYK RRSEANRPRP ETRTGCPAMI 120 KFRLMESCRW RIIEAELEHN HLISPVSGKF YKSHKQVGSS RTVLEDGAGE APKARTFRTV 180 VVDAGGDGNP QLQDVDKRVW VHDFNQLNLK EGDARAVHDF FRRSQLNDPQ FFYAMDHNEK 240 GTLRNVFWAD GRCRGAFKYF HDVVAIDTTC LTRKYAVPLV VFVGTNHHGQ LIIFGCGLLA 300 GETADSYTWL FRTWLTMMLG HPPQTIITNQ SKVLQAAISE VFPKASHLIS LVHLMESYPC 360 RFRGLFDSDA VRLDFNRAVY DSVKTEEFET AWERLTKRFG LLESDWFKTF YEDRKRCVPV 420 YVKDTFLAGL FPIQPTDSAP PMLLSYVHEK TSLTEFFVKY DEVAQTMNHM ETMADVESRN 480 GSCVLRSRCH FELQVSKLYT STVFKRFQDE VEAMYSCTST IQMNDDGPTE THIVREHVPH 540 DVNRSEAREF EVSYNPSEGD VKCICRLFNL KGYLCRHALC VLSQCGLVEI PAQYLLSRWR 600 KDIKRTYVVD HGHDSGTIDT RNPVNRHDHL CKVIVQIAEE GCKSRERYKL ALQLLGEMMS 660 RAKVVEDDGL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007215010.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A2N9FVB8 | 0.0 | A0A2N9FVB8_FAGSY; Uncharacterized protein | ||||
STRING | EMJ16209 | 0.0 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0167s0008.1.p |