PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0103s0001.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 343aa    MW: 37685.3 Da    PI: 4.1866
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0103s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.81.2e-131156146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         +g+W +eEde l++ v ++G+++W++I ++  ++Rt+k+c++rw +
  Kaladp0103s0001.1.p 11 KGPWKAEEDEVLINHVSKYGPRDWSSIRSKGLLRRTGKSCRLRWVN 56
                         79*************************888779***********87 PP
2Myb_DNA-binding39.71.2e-1267106344
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                          ++++eE+   ++  ++ G++ W+tIa +++ gRt++++k++w
  Kaladp0103s0001.1.p  67 KFSAEEERVVIEMQAEIGNK-WATIATYLP-GRTDNDVKNFW 106
                          79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.9E-21559IPR009057Homeodomain-like
PROSITE profilePS5129420.921662IPR017930Myb domain
SuperFamilySSF466891.05E-279106IPR009057Homeodomain-like
SMARTSM007171.6E-111060IPR001005SANT/Myb domain
CDDcd001674.80E-121358No hitNo description
PfamPF139216.1E-131473No hitNo description
Gene3DG3DSA:1.10.10.602.2E-1760112IPR009057Homeodomain-like
PROSITE profilePS5129416.79863114IPR017930Myb domain
SMARTSM007178.8E-1164112IPR001005SANT/Myb domain
CDDcd001673.49E-967106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAEEDEDQIR KGPWKAEEDE VLINHVSKYG PRDWSSIRSK GLLRRTGKSC RLRWVNKLRP  60
NLKNGCKFSA EEERVVIEMQ AEIGNKWATI ATYLPGRTDN DVKNFWSSRQ KRLARMRQAS  120
CSSATPPPPP PPSSENKCNG GHENLYADED VIPSLEVPEC GVEAEEMGAS TCTFRPDQCP  180
TLFSAYISHE PESLKMVELP ALMMMSSGPL SCEGAEAEGA TGMAAPMITA TERASELGMA  240
PFPPLHDDSL PIMTQPVLPF PAEELLGPAM EEPSFMDIFG ESGDDVMFGE ESESGIMSCN  300
SNVVPENGGP PVTFFDDFPS DMLDQMESLD RLDDSLPSPS QW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-2881121103MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-28811224126MYB TRANSFORMING PROTEIN
1mse_C4e-28111124103C-Myb DNA-Binding Domain
1msf_C4e-28111124103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002273472.15e-81PREDICTED: transcription factor MYB48
TrEMBLD7SLV61e-79D7SLV6_VITVI; Uncharacterized protein
STRINGVIT_15s0021g02040.t012e-80(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.16e-70MYB family protein