PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0102s0124.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 367aa MW: 40869.4 Da PI: 7.0231

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0102s0124.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.8	9.2e-09	131	151	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+ f++ G C++Gd C FaHg Kaladp0102s0124.1.p 131 ACPEFRK-GSCRRGDACEFAHG 151 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	6.146	78	115	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-6	126	152	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.798	126	153	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-7	131	151	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.3E-5	131	153	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	9.9	161	184	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MMIGEPPRSH PTIQIPPNWD PYEDPTADIN SPLQVNGGPF GSPDFTNPFS LPDSFGSLQR 60 YLPSNEPDMF DDEFADLPLD AFSCDNFRMY DFKVRRCARG RSHDWTECPF AHPGEKARRR 120 DPRKYSYSGT ACPEFRKGSC RRGDACEFAH GVFECWLHPD RYRTQACKDG LYCRRRICFF 180 AHSQDQLRVI NTPSPRKSLI SSNSADSYDG SPLRRSFDSF NANTASFCST SPPTSPPSSP 240 PLSTLLCSSY GSVNELVSNM RGLQLAKAAP SPTSTWATIG SPRGSSNLRP GFFSLPTTPT 300 RVPARSGRAQ FEQWDSSEEP VMERVESGRD LRAKIYAKLS KDNSFGPVND SQLTDPDVAW 360 ISDLVQ*

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MMIGEPPRSH PTIQIPPNWD PYEDPTADIN SPLQVNGGPF GSPDFTNPFS LPDSFGSLQR  60
YLPSNEPDMF DDEFADLPLD AFSCDNFRMY DFKVRRCARG RSHDWTECPF AHPGEKARRR  120
DPRKYSYSGT ACPEFRKGSC RRGDACEFAH GVFECWLHPD RYRTQACKDG LYCRRRICFF  180
AHSQDQLRVI NTPSPRKSLI SSNSADSYDG SPLRRSFDSF NANTASFCST SPPTSPPSSP  240
PLSTLLCSSY GSVNELVSNM RGLQLAKAAP SPTSTWATIG SPRGSSNLRP GFFSLPTTPT  300
RVPARSGRAQ FEQWDSSEEP VMERVESGRD LRAKIYAKLS KDNSFGPVND SQLTDPDVAW  360
ISDLVQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002275926.1	1e-142	PREDICTED: zinc finger CCCH domain-containing protein 23
Swissprot	Q9M0G2	1e-111	C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBL	A5BHR5	1e-141	A5BHR5_VITVI; Uncharacterized protein
TrEMBL	F6H381	1e-141	F6H381_VITVI; Uncharacterized protein
STRING	VIT_04s0008g00610.t01	1e-142	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-111	C3H family protein

Link Out ? help Back to Top
Phytozome	Kaladp0102s0124.1.p

Publications ? help Back to Top
Dokládal L, et al. cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase. Front Plant Sci, 2015. 6: p. 985 [PMID:26617625] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]