PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0101s0274.16.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 349aa MW: 39142.6 Da PI: 5.7364 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45 | 2.4e-14 | 23 | 67 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l + ++ +G+++W+ +a+++ +t qc+ rw++yl Kaladp0101s0274.16.p 23 VWTQEEDDILREQIRIYGTDNWAIVASEFS-DKTTRQCRRRWYTYL 67 6*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 44.9 | 2.6e-14 | 73 | 116 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd ll + +++G++ W+ Ia+++ gRt++ +k+r+ + Kaladp0101s0274.16.p 73 KGGWTPEEDALLCESQRKYGNK-WTEIAKMVS-GRTDNAVKNRFST 116 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.662 | 16 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 9.3E-14 | 20 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.42E-26 | 20 | 114 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.5E-15 | 24 | 84 | No hit | No description |
CDD | cd00167 | 2.89E-13 | 24 | 67 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-20 | 24 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.651 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 72 | 120 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 76 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-10 | 76 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 349 aa Download sequence Send to blast |
MKKRSDSNST EGANKLKERH IVVWTQEEDD ILREQIRIYG TDNWAIVASE FSDKTTRQCR 60 RRWYTYLNSD FKKGGWTPEE DALLCESQRK YGNKWTEIAK MVSGRTDNAV KNRFSTLCKK 120 KAKREALAEE DSTSLSSVGK KRAWLKNQPH KTGTEENQVP YKKIRRIRIS VPAESCNRGK 180 LIPGDYPLGE HTQIIPDLCE ESSGSSDYST GSTLLSHVTE GTPTNQTMDI SELNQDSGSE 240 IRISLGQKES EESMTIFGSL SYQADGFQSS QEPTSEEVFS AESAVEFGSP LQVIPLFPDE 300 SAELPSPVFS ESERNFLIKA LGMETPHHPG TDQPQPQPVC KRVLLHSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-27 | 24 | 122 | 10 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021606218.1 | 1e-100 | transcription factor MYB88-like | ||||
TrEMBL | A0A2C9WM65 | 9e-99 | A0A2C9WM65_MANES; Uncharacterized protein | ||||
STRING | Migut.K00887.1.p | 5e-82 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14350.2 | 5e-60 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0101s0274.16.p |