PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0101s0274.15.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39229.7 Da PI: 5.7364 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 5.9e-13 | 23 | 68 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l + ++ +G++ +W+ +a+++ +t qc+ rw++yl Kaladp0101s0274.15.p 23 VWTQEEDDILREQIRIYGTDnSWAIVASEFS-DKTTRQCRRRWYTYL 68 6******************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 44.9 | 2.7e-14 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g WT+eEd ll + +++G++ W+ Ia+++ gRt++ +k+r+ + Kaladp0101s0274.15.p 74 KGGWTPEEDALLCESQRKYGNK-WTEIAKMVS-GRTDNAVKNRFST 117 688*******************.*********.**********976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.356 | 16 | 68 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-12 | 20 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-19 | 24 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.8E-15 | 24 | 85 | No hit | No description |
CDD | cd00167 | 1.26E-11 | 24 | 68 | No hit | No description |
SuperFamily | SSF46689 | 4.12E-26 | 48 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.651 | 69 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.14E-10 | 77 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 77 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 350 aa Download sequence Send to blast |
MKKRSDSNST EGANKLKERH IVVWTQEEDD ILREQIRIYG TDNSWAIVAS EFSDKTTRQC 60 RRRWYTYLNS DFKKGGWTPE EDALLCESQR KYGNKWTEIA KMVSGRTDNA VKNRFSTLCK 120 KKAKREALAE EDSTSLSSVG KKRAWLKNQP HKTGTEENQV PYKKIRRIRI SVPAESCNRG 180 KLIPGDYPLG EHTQIIPDLC EESSGSSDYS TGSTLLSHVT EGTPTNQTMD ISELNQDSGS 240 EIRISLGQKE SEESMTIFGS LSYQADGFQS SQEPTSEEVF SAESAVEFGS PLQVIPLFPD 300 ESAELPSPVF SESERNFLIK ALGMETPHHP GTDQPQPQPV CKRVLLHSL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-25 | 24 | 123 | 10 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021606218.1 | 6e-99 | transcription factor MYB88-like | ||||
TrEMBL | A0A2C9WM65 | 7e-97 | A0A2C9WM65_MANES; Uncharacterized protein | ||||
STRING | Migut.K00887.1.p | 3e-80 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14350.2 | 3e-58 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0101s0274.15.p |