PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0101s0013.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 541aa    MW: 60771.6 Da    PI: 4.5507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0101s0013.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.49.9e-5291361128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          l+pGfrFhPtdeelv +yL++k+ g+ +++ ++i+++d+yk+ePw+Lp k k+k+++ ewyfFs  d+ky++g+++nrat++gyWk+tgk
  Kaladp0101s0013.1.p   9 LAPGFRFHPTDEELVRYYLRRKICGRGFRF-DAIASTDVYKSEPWELPgKsKLKSRDLEWYFFSMLDRKYSNGSKTNRATENGYWKTTGK 97 
                          579**************************9.99***************6347777888******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++vl+ k+++vg+kktLv+++grap+g +++Wvmheyrl
  Kaladp0101s0013.1.p  98 DRPVLH-KSKTVGMKKTLVYHHGRAPHGARSNWVMHEYRL 136
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-616159IPR003441NAC domain
PROSITE profilePS5100557.2449159IPR003441NAC domain
PfamPF023659.1E-2811136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MGRKPAASLA PGFRFHPTDE ELVRYYLRRK ICGRGFRFDA IASTDVYKSE PWELPGKSKL  60
KSRDLEWYFF SMLDRKYSNG SKTNRATENG YWKTTGKDRP VLHKSKTVGM KKTLVYHHGR  120
APHGARSNWV MHEYRLIDED LEKAGVLQDA FVLCRIFQKS GSGPKNGEQY GAPFEEEEWD  180
DDVVTTVPGE QLTNEVVVCD NPYSEADDVY IDADELEQNN SDISPAAPPA FNYYDDSGSC  240
LFDDDQKPFI GTRENYESNI VDGESCFDVL NVLDPYEGED KPVKEEHFAV SGETPLDASY  300
LLEEPYLNAN QEPLLHEGLF LETNDLLNQV EPDPSNFDML EEYLNYFESS DTLTQTESQV  360
VADESLPASK QVDREIERLV LKSQLHPDAQ GSDVASSSNQ CPEDTKFDSG FKHQFVNMLG  420
KKQSPYSFST KDASLRLASS SQSPSSIHVT AGMVQIRNMD AFGNRLSWTF NKNGNIEVVL  480
SLALPRRDAD TSSLDILADK LSGKASSAMF RAWFYLIVFW VLIIAISFKI ASLVSTKGSC  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-47816519174NAC domain-containing protein 19
3swm_B1e-47816519174NAC domain-containing protein 19
3swm_C1e-47816519174NAC domain-containing protein 19
3swm_D1e-47816519174NAC domain-containing protein 19
3swp_A1e-47816519174NAC domain-containing protein 19
3swp_B1e-47816519174NAC domain-containing protein 19
3swp_C1e-47816519174NAC domain-containing protein 19
3swp_D1e-47816519174NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810145.10.0PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A2I4DSM20.0A0A2I4DSM2_JUGRE; NAC domain-containing protein 53-like
STRINGPOPTR_0008s03170.11e-171(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-134NAC domain containing protein 2