PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0095s0813.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WOX | ||||||||
Protein Properties | Length: 419aa MW: 46523.2 Da PI: 6.8217 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.7 | 7.5e-22 | 119 | 178 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++Leel+++ +r+psa+++++++++l +++ ++V++WFqN++a+e++ Kaladp0095s0813.1.p 119 SRWNPTPEQLRALEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 178 8*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 115.4 | 2.7e-37 | 117 | 180 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+ Kaladp0095s0813.1.p 117 SSSRWNPTPEQLRALEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 180 579***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 4.7E-6 | 116 | 183 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-9 | 119 | 178 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-19 | 119 | 178 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-12 | 119 | 184 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.46E-5 | 120 | 174 | No hit | No description |
PROSITE profile | PS50071 | 11.029 | 124 | 179 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048513 | Biological Process | animal organ development | ||||
GO:0099402 | Biological Process | plant organ development | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 419 aa Download sequence Send to blast |
MWMMGYTNPA TAIPENNGGG GGNDQFGGSS MMGIMSPDSF NGRKLRPLIP RPSASAIPTH 60 PTCFNHTNCD TASNFFTLNH HMAAAASHHH LVGVEEQAGK RESFMSGHQH HQSVVVSSSR 120 WNPTPEQLRA LEELYRRGTR TPSADQIQHI TAQLRRYGKI EGKNVFYWFQ NHKARERQKR 180 RRQQLENSSS SPNHQQQSSH NHLHQDQQPK DQPSGDLSNH NDNKGTTGFE IEQTKLWPAP 240 ANCSTLADQG SVHRTEKATA GLAAAAAAAE CVTDDEWVQF QDHHNSLQIA STAATTMLQD 300 TNDTAGEHRR RRTSLNLLLT KNATWDSSHH LSLPTPSAAC SFFKPATVHQ ISMLNNEDIE 360 DENSDQCSKE GGLTLELFPL RSNGAMDFIK DDEDEIKATH STPFQFFEFL PLKNSNAN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-37 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0095s0813.1.p |