PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0095s0761.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | WRKY | ||||||||
Protein Properties | Length: 306aa MW: 34119.3 Da PI: 8.1517 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.5 | 6.5e-29 | 121 | 180 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK+ k+++ pr+Y+rC +a +Cpvkkkv+rs ed++++++ Yeg+Hnh+k Kaladp0095s0761.2.p 121 RDGYQWRKYGQKVTKDNPSPRAYFRCVMApTCPVKKKVQRSVEDETILVVSYEGHHNHSK 180 7**************************999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-27 | 113 | 180 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-24 | 116 | 179 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.5E-31 | 120 | 180 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.409 | 122 | 181 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-23 | 122 | 178 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEEGAVEEMR KENARLRHIV KHLQAEADGR RGKRGAAAAG MDDIDGDQQL KHSCHLSTKG 60 DDCYCYGASS ETIPYVDHEM VNGIKRPRMI PCLQVHTTSG NKAYQVFVRT NDTRDKSLSV 120 RDGYQWRKYG QKVTKDNPSP RAYFRCVMAP TCPVKKKVQR SVEDETILVV SYEGHHNHSK 180 IGFEPPQVLH LASSPTLDSS STIHTTPSLT ISGSNVNPFT KPTVTLDLSL SGNHQFSNNN 240 TDQETPTSSK FTPSFDSRNL FEKWDKMNGE FIGEYVASLT RDPNFSMALA MAVVRSMPDM 300 STRPM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-18 | 120 | 178 | 14 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A438FZA7 | 5e-52 | A0A438FZA7_VITVI; WRKY transcription factor 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 4e-39 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0095s0761.2.p |