PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0095s0553.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 358aa MW: 39933.1 Da PI: 5.7004

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0095s0553.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6.1e-56	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++k+ + ++ + +i e+d++k+ePwdLp+k+k +e+ewyfF+ rdkky+tg r+nrat++gyWkatgkdk Kaladp0095s0553.1.p 18 LPPGFRFHPTDEELITHYLRHKIVDASFVA-VAIGEADLNKCEPWDLPAKAKMGENEWYFFCLRDKKYPTGLRTNRATEAGYWKATGKDK 106 79***********************888.67***********99999********************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ +++lvg+kktLvfy+grapkg k++Wvmheyrle Kaladp0095s0553.1.p 107 EIFR-GKSLVGMKKTLVFYRGRAPKGDKSNWVMHEYRLE 144 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-62	15	168	IPR003441	NAC domain
PROSITE profile	PS51005	58	18	168	IPR003441	NAC domain
Pfam	PF02365	1.5E-29	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MDQSMLVIKD QDDQQIDLPP GFRFHPTDEE LITHYLRHKI VDASFVAVAI GEADLNKCEP 60 WDLPAKAKMG ENEWYFFCLR DKKYPTGLRT NRATEAGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYRGRAPK GDKSNWVMHE YRLEGKLSFH NLPQTAKTEW VISRVFEKSC SGKKMHVPGL 180 VPSLSCLENF MAQSELPPLM DFSQFDTKLN NIASSNNVSC FSSQTAFPRA APPPQPDLII 240 GSNQLYAISG NQPFSNPNQM FIPGNFQFPG SLPDQDEALM RGYLDSINSS DGGWLLNSGR 300 EMVSVSQETG LTSDVNVNMN SNEISSVMSN NVGARRPFED GSTSGAGPVD LDYLWPY*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MDQSMLVIKD QDDQQIDLPP GFRFHPTDEE LITHYLRHKI VDASFVAVAI GEADLNKCEP  60
WDLPAKAKMG ENEWYFFCLR DKKYPTGLRT NRATEAGYWK ATGKDKEIFR GKSLVGMKKT  120
LVFYRGRAPK GDKSNWVMHE YRLEGKLSFH NLPQTAKTEW VISRVFEKSC SGKKMHVPGL  180
VPSLSCLENF MAQSELPPLM DFSQFDTKLN NIASSNNVSC FSSQTAFPRA APPPQPDLII  240
GSNQLYAISG NQPFSNPNQM FIPGNFQFPG SLPDQDEALM RGYLDSINSS DGGWLLNSGR  300
EMVSVSQETG LTSDVNVNMN SNEISSVMSN NVGARRPFED GSTSGAGPVD LDYLWPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-50	15	174	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-50	15	174	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-50	15	174	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-50	15	174	14	171	NO APICAL MERISTEM PROTEIN
4dul_A	4e-50	15	174	14	171	NAC domain-containing protein 19
4dul_B	4e-50	15	174	14	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258290.1	1e-136	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	1e-108	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8A0S9	1e-135	A0A1U8A0S9_NELNU; NAC domain-containing protein 100-like
STRING	XP_010258290.1	1e-136	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-111	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Kaladp0095s0553.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]