PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0442.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family AP2
Protein Properties Length: 515aa    MW: 55908.4 Da    PI: 7.0402
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0442.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.7e-14145204155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s ++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Kaladp0095s0442.1.p 145 SVFRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 204
                          689******************666664477446**********99*************97 PP
2AP246.49.6e-15249298355
                  AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Kaladp0095s0442.1.p 249 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 298
                          9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.1E-11145204IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-16145213IPR016177DNA-binding domain
CDDcd000182.53E-19145213No hitNo description
PROSITE profilePS5103218.439146212IPR001471AP2/ERF domain
SMARTSM003805.1E-25146218IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-14146212IPR001471AP2/ERF domain
PRINTSPR003676.9E-6147158IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18247308IPR016177DNA-binding domain
CDDcd000189.24E-24247308No hitNo description
SMARTSM003807.1E-33248312IPR001471AP2/ERF domain
PROSITE profilePS5103219.203248306IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-18248307IPR001471AP2/ERF domain
PfamPF008471.3E-9249298IPR001471AP2/ERF domain
PRINTSPR003676.9E-6288308IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MNSNEQHRSG SNWLAFTLSN TKPLSLFHAS SSAAAFGEGG AEEDAAELSM MLGGDGPKLE  60
DFLGASSGSN SNGDGAVVFS QSANNSQQIQ QQQQHHMYEE GSELRTIEAG CFARQNISGG  120
GGIEQRDQQQ PTAKKTVETF GNRTSVFRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQV  180
YLGGYDKEDK AARAYDLAAL KYWGLTTTTN FPIGNYEREL EEMQNMTRQE FVASLRRRSS  240
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN  300
AVTNFDMSRY DVKSIANNNL PIGGMASKPK MSADSISEGR SDNDRDISES SVSFASPHQE  360
PQPVNNSNLS FALPVKQDPV SSYWPAILGC GSNQITLATP SHNSHSHPIN NYFYSNNPTA  420
TGPQYSNNMN IYCATNGSSM AGSEPGSVGT STVIPYGTPI SMTMTSSSSV VVGTHENVSS  480
SGSGISNWVS PNLPQYQAGK PSLLVFQTPI FGVE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022756546.11e-170AP2-like ethylene-responsive transcription factor AIL5 isoform X2
SwissprotQ6PQQ31e-144AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A061GPU41e-169A0A061GPU4_THECC; AP2-like ethylene-responsive transcription factor AIL5, putative
STRINGEOY318701e-170(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-121AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]