PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0095s0266.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 428aa    MW: 46667 Da    PI: 7.7417
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0095s0266.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.85.2e-10101125126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC+f+++ G C +G++C++ H+
  Kaladp0095s0266.1.p 101 KKTKLCNFWSQ-GNCTFGEKCRYLHS 125
                          59*********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.4462248IPR000571Zinc finger, CCCH-type
SMARTSM003560.422347IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-7100125IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6100126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.981100127IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-9102123IPR000571Zinc finger, CCCH-type
SuperFamilySSF509789.77E-44122179IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.101.6E-42124418IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003202.8E-5131170IPR001680WD40 repeat
PfamPF004003.8E-5135170IPR001680WD40 repeat
PROSITE profilePS5029420.039138387IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.382138179IPR001680WD40 repeat
PROSITE patternPS006780157171IPR019775WD40 repeat, conserved site
PRINTSPR003209.2E-7157171IPR020472G-protein beta WD-40 repeat
SMARTSM0032081210247IPR001680WD40 repeat
SuperFamilySSF509789.77E-44217421IPR017986WD40-repeat-containing domain
SMARTSM003200.0011254291IPR001680WD40 repeat
PfamPF004000.0057258291IPR001680WD40 repeat
PROSITE profilePS5008212.915261300IPR001680WD40 repeat
PRINTSPR003209.2E-7278292IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780278292IPR019775WD40 repeat, conserved site
SMARTSM003204.9E-4294331IPR001680WD40 repeat
PfamPF004000.0012296330IPR001680WD40 repeat
PRINTSPR003209.2E-7318332IPR020472G-protein beta WD-40 repeat
SMARTSM003204335378IPR001680WD40 repeat
SMARTSM0032011381418IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDLDGGKRVF QRLGGGGSDA GDKQQKVCFH WRAGRCNRHP CPFLHRELPE PAARSSNGGL  60
SSRRPHDDSG GGFSGPRQKA HSFNSASSWG RNNNRAAVPP KKTKLCNFWS QGNCTFGEKC  120
RYLHSWSLGE SFTFLTQLDG HKKVATAIAW PAGSDKLFTG SKDETVMIWD CQSGKCENVA  180
NLGGEIGCMI SEGPWIFVGL PNFVKALNTV TSSDQSLAGP VGQVYALVVG YDMLIAGTQE  240
GTILAWRFNT VTNCFEPAAS LKGHNLAVVT LVVAANRLYS GSMDNTIRVW NLDSLQCIQT  300
LTEHTSVVMS VLCWEQFLIS CSLDKTVKIW VATESGNLEV TYTHTEEYGI LTLCGMTDAE  360
AKPVLLCSCN DNTVRFYDLP SFTDRGKIFS KEEIRTIQLG PAGLFFTGDG AGQVKIWKWL  420
DKPVPAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B7e-15117417130391F-box/WD repeat protein 7
2ovq_B7e-15117417130391F-box/WD repeat protein 7
2ovr_B7e-15117417130391F-box/WD repeat protein 7
5v4b_B8e-15117417130391F-box/WD repeat-containing protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007218032.10.0zinc finger CCCH domain-containing protein 48
RefseqXP_021827028.10.0zinc finger CCCH domain-containing protein 48
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLM5X1760.0M5X176_PRUPE; Uncharacterized protein
STRINGEMJ192310.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1