PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0094s0095.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

C3H

Protein Properties

Length: 692aa MW: 75346.5 Da PI: 6.5069

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0094s0095.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.2e-07	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Kaladp0094s0095.3.p 278 PCPDFRK-GACRRGDMCEYAHG 298 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.25.40.20	8.3E-18	13	141	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	8.4E-10	53	126	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	5.91E-16	55	135	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0021	57	87	IPR002110	Ankyrin repeat
PROSITE profile	PS50297	17.555	57	164	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.52E-15	59	135	No hit	No description
SMART	SM00248	0.0011	92	124	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.114	92	127	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	273	299	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.1E-5	278	298	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.9E-4	278	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	278	300	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	83	308	331	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MNNLSIETED TFGSLLEFAA NNDIEGFKKW IECAPSSIDE VGLWYIRLPG TKQLVLEERT 60 PLMVAATYGS IDVLKLILSS SDADVNRACG NTKSTALHCA ASGGSDNTLE VVKLLLAAGG 120 DPNLADSNGR CPVDVIVVSP KSADLKLSLK QLLAGNGSVS GGNQAKCVPS SNSNNAVVPS 180 SPRNDSPSSA FGSYSLRNAK FEEPTILCGS EKKEYPIDPT FPDIKNSIYG TDEFRMYSFK 240 VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF 300 ECWLHPAQYR TRLCKDGIDC ARRVCFFAHT TEELRPLYVS TGSAVPSPHS NYSSAMDFAA 360 AMNMLPGSPS SVPVMSPSPF TPPMSPSANG SPSQLSWPPN IPTLNLPGSN LQSSRLRSSI 420 NARDLQAEEF VMMGEADAQQ YQLLKDLTSH YGANSLERPG RLKTPTPLNL EDLFAADNLS 480 PRYVDSPFGS SVHSPTHKSA LLHQFQQQKQ GMISPINTNM SANNVDHHLL QGSYGAYSGR 540 MSPRNVERLE PISPINSRVS MLANREKLRS LSFREPGTNA GALVGSPLSN WGSFSGKLDW 600 ALSSEELDKL RRSSSFDMRN SREDPDSVWA HSPILEPAPE IRERASASGL AIASLTEGMS 660 SSSSNTNTLD HAALGAWLEQ MQLDELMSTS K*

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MNNLSIETED TFGSLLEFAA NNDIEGFKKW IECAPSSIDE VGLWYIRLPG TKQLVLEERT  60
PLMVAATYGS IDVLKLILSS SDADVNRACG NTKSTALHCA ASGGSDNTLE VVKLLLAAGG  120
DPNLADSNGR CPVDVIVVSP KSADLKLSLK QLLAGNGSVS GGNQAKCVPS SNSNNAVVPS  180
SPRNDSPSSA FGSYSLRNAK FEEPTILCGS EKKEYPIDPT FPDIKNSIYG TDEFRMYSFK  240
VRPCSRAYSH DWTECPFVHP GENARRRDPR KFHYSCVPCP DFRKGACRRG DMCEYAHGVF  300
ECWLHPAQYR TRLCKDGIDC ARRVCFFAHT TEELRPLYVS TGSAVPSPHS NYSSAMDFAA  360
AMNMLPGSPS SVPVMSPSPF TPPMSPSANG SPSQLSWPPN IPTLNLPGSN LQSSRLRSSI  420
NARDLQAEEF VMMGEADAQQ YQLLKDLTSH YGANSLERPG RLKTPTPLNL EDLFAADNLS  480
PRYVDSPFGS SVHSPTHKSA LLHQFQQQKQ GMISPINTNM SANNVDHHLL QGSYGAYSGR  540
MSPRNVERLE PISPINSRVS MLANREKLRS LSFREPGTNA GALVGSPLSN WGSFSGKLDW  600
ALSSEELDKL RRSSSFDMRN SREDPDSVWA HSPILEPAPE IRERASASGL AIASLTEGMS  660
SSSSNTNTLD HAALGAWLEQ MQLDELMSTS K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024187184.1	0.0	zinc finger CCCH domain-containing protein 30
Refseq	XP_024187186.1	0.0	zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A2P6RDZ7	0.0	A0A2P6RDZ7_ROSCH; Putative transcription factor C3H family
STRING	XP_008240870.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Kaladp0094s0095.3.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]