PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0094s0054.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 417aa    MW: 46193.9 Da    PI: 6.3484
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0094s0054.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.6e-08166186526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C++f++ G C+ Gd C FaHg
  Kaladp0094s0054.2.p 166 ACPDFRK-GNCRKGDACEFAHG 186
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-6159188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.08161188IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6161187IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-6166186IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.944196220IPR000571Zinc finger, CCCH-type
SMARTSM0035612196219IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MQNTHLSCLH IPGQSFSINN NIAQHSMMLG DYKFSSTSSS LHVPPWSSLA VDDPFSPLPA  60
NMNFISADGS PASFSDSAYA SLRRYLPSND ADIDGDVELL DYLGVDAEEE EFPLDAYSCD  120
QFRMFDFKVR RCVRAKSHDW TECPYAHPGE KARRRDPRKY NYAGTACPDF RKGNCRKGDA  180
CEFAHGVFEC WLHPNRYRTQ PCKDGVNCRR RVCFFAHTPD QLRVVTESSP RSVVDSYDGS  240
PLRQALEAAV TKSAMPLMLS ISPPATPTAD SPPVSPLTRS LSRSLGSSSV NELVVSLRQL  300
QLNKQVKSMP RASYNLPGYG GSPRGSSLLK PGFFSLPNTP TGIQTRGVAG RHLELWERSV  360
EEEEDLEPAM ERVESGRCLR AKMLEKLRND NSLMDPAAEC SSTPDPDVGW VSELLQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021597894.11e-153zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-122C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2C9UAC71e-151A0A2C9UAC7_MANES; Uncharacterized protein
STRINGcassava4.1_009450m1e-152(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-107C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]