PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0093s0119.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 366aa    MW: 40539.4 Da    PI: 8.1829
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0093s0119.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.51.5e-54231491127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+++yL +k+++ +++  ++i++vd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdk
  Kaladp0093s0119.1.p  23 LPPGFRFHPTDEELITFYLLNKIADASFTG-RAIADVDLNKSEPWDLPSKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDK 111
                          79*************************999.89***************99999************************************* PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                          e++++ + el+g+kktLvfy+grap+gekt+Wvmheyr
  Kaladp0093s0119.1.p 112 EIFNSaSAELIGMKKTLVFYRGRAPRGEKTNWVMHEYR 149
                          ***9867788***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6316171IPR003441NAC domain
PROSITE profilePS5100560.30523171IPR003441NAC domain
PfamPF023652.9E-2824149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MEGGASGDQV EKNKEAAAAT ETLPPGFRFH PTDEELITFY LLNKIADASF TGRAIADVDL  60
NKSEPWDLPS KAKMGEKEWY FFSLRDRKYP TGVRTNRATN TGYWKTTGKD KEIFNSASAE  120
LIGMKKTLVF YRGRAPRGEK TNWVMHEYRN HSKATFRSAK DEWVVCRVFQ KSAGIKKQYP  180
TQQSSSSRSI TPYNMDMSSN LMQQPMLQQD NTLHYPIGRA ATNYMINSID QLAELTRAFR  240
SNAASATMMN HLPIIPPPHQ QLNHYPNAAA GGAGLFTISG LNLNLGGQQA AASSGMIAQQ  300
DAGVVMMNTE SLNTAANSNY GDLHQGGGYI GLEMSGNDAS QNPNNTRYMN NMDQCMDLDN  360
YWASY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-562217716171NO APICAL MERISTEM PROTEIN
1ut4_B3e-562217716171NO APICAL MERISTEM PROTEIN
1ut7_A3e-562217716171NO APICAL MERISTEM PROTEIN
1ut7_B3e-562217716171NO APICAL MERISTEM PROTEIN
3swm_A3e-562217719174NAC domain-containing protein 19
3swm_B3e-562217719174NAC domain-containing protein 19
3swm_C3e-562217719174NAC domain-containing protein 19
3swm_D3e-562217719174NAC domain-containing protein 19
3swp_A3e-562217719174NAC domain-containing protein 19
3swp_B3e-562217719174NAC domain-containing protein 19
3swp_C3e-562217719174NAC domain-containing protein 19
3swp_D3e-562217719174NAC domain-containing protein 19
4dul_A3e-562217716171NAC domain-containing protein 19
4dul_B3e-562217716171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021607062.11e-140NAC domain-containing protein 92 isoform X3
TrEMBLA0A0M4FKX71e-138A0A0M4FKX7_MANES; NAC transcription factors 26
TrEMBLA0A2C9W5R61e-138A0A2C9W5R6_MANES; Uncharacterized protein
STRINGcassava4.1_011442m1e-139(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.21e-111NAC domain containing protein 38