PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0092s0168.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 356aa    MW: 38593.8 Da    PI: 7.3263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0092s0168.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding422.1e-13115159347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++lG+g+W+ Iar    +Rt+ q+ s+ qky
  Kaladp0092s0168.2.p 115 PWTEEEHRLFLIGLHKLGKGDWRGIARNYVMTRTPTQVASHAQKY 159
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.122108164IPR017930Myb domain
SuperFamilySSF466898.97E-17110165IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-17111163IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.3E-10112158IPR009057Homeodomain-like
SMARTSM007171.6E-10112162IPR001005SANT/Myb domain
PfamPF002499.4E-12115159IPR001005SANT/Myb domain
CDDcd001673.03E-9115160No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MTRRCSHCSF DGHDSRTCPS RATSSSSPAA NCSTTTGGGG GGVKLFGVRL TDGSIMKKSA  60
SMGNLSSSPS TAAASPNPSS PASDTTGNAR AAPDGYLSDD PAHVNRRSDR KKGTPWTEEE  120
HRLFLIGLHK LGKGDWRGIA RNYVMTRTPT QVASHAQKYF IRQSNASRRK RRTSLFDMTP  180
DMETDTPPAP EHFLLPPQTS ETNHENSVSL TSQNLDAQPM EVTSDETVRE SDDTSVQTSY  240
ILPVPVVPTF YPAYVPVPFR FWSPNLAPTE EENPETSNHQ VLKPIPVIPK DPINVDELIG  300
MSQLSIKETV NGPEDSHPLS ARLLGSPSRQ SAFRPRRSAS VPNLTQDNAD SNPVQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902398.11e-131transcription factor MYBS3-like
RefseqXP_015902404.11e-131transcription factor MYBS3-like
SwissprotQ7XC572e-90MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLA0A1Q3B0D81e-130A0A1Q3B0D8_CEPFO; Myb_DNA-binding domain-containing protein
STRINGevm.model.supercontig_2092.11e-128(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-77MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]