PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0091s0138.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 303aa MW: 32409.1 Da PI: 8.1635 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.7 | 5.4e-10 | 85 | 109 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f+ GtC+y +C+FaH+ Kaladp0091s0138.3.p 85 FKTKLCCKFRV-GTCPYVTNCNFAHS 109 69*********.*************8 PP | |||||||
2 | zf-CCCH | 18.1 | 4.7e-06 | 163 | 183 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+ f+ C+yGd+C+++H+ Kaladp0091s0138.3.p 163 CKKFYTAEGCPYGDSCTYIHD 183 99****99************7 PP | |||||||
3 | zf-CCCH | 41.9 | 1.6e-13 | 236 | 261 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg Kaladp0091s0138.3.p 236 WKTKICNKWEMTGFCPFGSKCHFAHG 261 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-14 | 82 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-8 | 82 | 115 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.727 | 84 | 111 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0016 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-7 | 85 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.122 | 157 | 185 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.42 | 157 | 184 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 159 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-7 | 161 | 185 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-15 | 230 | 262 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-9 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 235 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-9 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-10 | 236 | 261 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGYGGESGFG NGNVVQIVTG GSSWDSGVAG NFDQAVWATD EEYTVWNGQQ SQARLGSEPA 60 NKKARSSQPA ESLTGRAKAI GKMFFKTKLC CKFRVGTCPY VTNCNFAHSL EELRKPPPNW 120 QDIVAAHDGE KKVLEPREEF KIPSVVSTDF SGDGSRSSRG RHCKKFYTAE GCPYGDSCTY 180 IHDEHSRARE SVAISLNTGG SGGGGGGSSG GGGAGGSTHY GIVVGGGPQN LKPANWKTKI 240 CNKWEMTGFC PFGSKCHFAH GAAGVPCFTI PPHLQYQSYQ CTVLAIQTWL HEYTNDFKDP 300 KI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028118033.1 | 1e-107 | zinc finger CCCH domain-containing protein 12-like | ||||
Swissprot | Q9LQM3 | 5e-81 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A2N9GAB3 | 1e-105 | A0A2N9GAB3_FAGSY; Uncharacterized protein | ||||
STRING | XP_009767653.1 | 1e-103 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 3e-76 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0091s0138.3.p |