PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0091s0138.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 352aa    MW: 37166.4 Da    PI: 8.3471
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0091s0138.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.46.6e-1085109126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC+ f+  GtC+y  +C+FaH+
  Kaladp0091s0138.1.p  85 FKTKLCCKFRV-GTCPYVTNCNFAHS 109
                          69*********.*************8 PP
2zf-CCCH17.85.7e-06163183626
                          -SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                          C+ f+    C+yGd+C+++H+
  Kaladp0091s0138.1.p 163 CKKFYTAEGCPYGDSCTYIHD 183
                          99****99************7 PP
3zf-CCCH41.71.9e-13236261126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt++C+ +  tG+C++G++C+FaHg
  Kaladp0091s0138.1.p 236 WKTKICNKWEMTGFCPFGSKCHFAHG 261
                          8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.23E-882115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1382117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.72784111IPR000571Zinc finger, CCCH-type
SMARTSM003560.001684110IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-785109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122157185IPR000571Zinc finger, CCCH-type
SMARTSM003560.42157184IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6159185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-7161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-17230266IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10232266IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507235263IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-9235262IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10236261IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGYGGESGFG NGNVVQIVTG GSSWDSGVAG NFDQAVWATD EEYTVWNGQQ SQARLGSEPA  60
NKKARSSQPA ESLTGRAKAI GKMFFKTKLC CKFRVGTCPY VTNCNFAHSL EELRKPPPNW  120
QDIVAAHDGE KKVLEPREEF KIPSVVSTDF SGDGSRSSRG RHCKKFYTAE GCPYGDSCTY  180
IHDEHSRARE SVAISLNTGG SGGGGGGSSG GGGAGGSTHY GIVVGGGPQN LKPANWKTKI  240
CNKWEMTGFC PFGSKCHFAH GAAELNQFGG GPVAVEAKSS SVAQAESPSK APGDLIVAST  300
TPAPHADIYK TGMPPQRPSC AVQGLAQRIH QKWKGPDKIS RIYGDWIDDV Q*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028118033.11e-144zinc finger CCCH domain-containing protein 12-like
SwissprotQ84UQ31e-108C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2I4DNW11e-141A0A2I4DNW1_JUGRE; zinc finger CCCH domain-containing protein 12-like
STRINGXP_010096556.11e-142(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-101C3H family protein