PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0091s0059.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C3H | ||||||||
Protein Properties | Length: 499aa MW: 55184.7 Da PI: 4.6781 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 40.5 | 4.7e-13 | 170 | 194 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e C++++r+G CkyG +CkF+H+p Kaladp0091s0059.1.p 170 AEDCNYYMRMGSCKYGLSCKFNHPP 194 689********************97 PP | |||||||
2 | zf-CCCH | 27 | 7.8e-09 | 218 | 241 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C++++ G CkyG C+F+H++ Kaladp0091s0059.1.p 218 VECKYYLSAGGCKYGKACRFSHSR 241 68********************95 PP | |||||||
3 | zf-CCCH | 33.8 | 5.7e-11 | 262 | 286 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G Cky ++C+F+H+ Kaladp0091s0059.1.p 262 GEKECPYYMRNGSCKYAATCRFNHP 286 7899********************9 PP | |||||||
4 | zf-CCCH | 33.1 | 9.2e-11 | 385 | 411 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ff++tG Ck+ +rCkF+H++ Kaladp0091s0059.1.p 385 PGQPECTFFLKTGDCKFRSRCKFHHPK 411 5789*********************96 PP | |||||||
5 | zf-CCCH | 28.5 | 2.7e-09 | 431 | 456 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C +++ +G+Ck+G++C++ H+p Kaladp0091s0059.1.p 431 GQSICAHYSNYGICKFGPKCRYDHPP 456 7899********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 6.8E-7 | 167 | 194 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.746 | 167 | 195 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-5 | 168 | 195 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 170 | 194 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-4 | 173 | 193 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 214 | 242 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.8E-4 | 214 | 241 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-7 | 218 | 241 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.2E-5 | 219 | 243 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.6E-6 | 220 | 242 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.54 | 260 | 288 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.1E-8 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.24E-5 | 262 | 288 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-4 | 266 | 285 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.1E-4 | 384 | 411 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.464 | 384 | 412 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 386 | 411 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 388 | 413 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.77E-6 | 426 | 454 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.103 | 429 | 457 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-4 | 429 | 456 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-6 | 431 | 456 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.0E-4 | 433 | 455 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MEVPEPISTP DSDQRQPLTH GSQSPLPDQL GDDPKSPPPA PLTEEFQAIL NLKEDAAPDA 60 GEDSDGGHVN GVSEQEEEDD VGGVGESQNE TGKDGEMEKA ENGEQEEEIV KDGWSDDQCV 120 RVDGDREEDD SGDGYQVDGW SNGNGVGETE SKEEVQGRDM QLQYPLRPGA EDCNYYMRMG 180 SCKYGLSCKF NHPPRRRNLT LKPRMKERED NSERPMQVEC KYYLSAGGCK YGKACRFSHS 240 RERPTVVPVS EYNFLGLPIR PGEKECPYYM RNGSCKYAAT CRFNHPDPTA GSNSPSGYAN 300 DEQASPWSPS MPSNEAVPFV PASYTSAQGV HSHIYEWKGY QGPAFTAEKS FRPSPAFGLS 360 IPPMERSAYS DFQPQLTSEE FPERPGQPEC TFFLKTGDCK FRSRCKFHHP KDQTVQLSCA 420 MTDKGLPLRP GQSICAHYSN YGICKFGPKC RYDHPPDIQH TPPPAMTGLG HPRNPFSNFT 480 SPEDTSRLSS IGEGTITL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019457493.1 | 1e-127 | PREDICTED: zinc finger CCCH domain-containing protein 43-like isoform X1 | ||||
Swissprot | Q5RJC5 | 1e-108 | C3H67_ARATH; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A4P1RTQ3 | 1e-126 | A0A4P1RTQ3_LUPAN; Uncharacterized protein | ||||
STRING | EOY22360 | 1e-126 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63260.1 | 1e-110 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0091s0059.1.p |