PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0090s0076.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 508aa    MW: 55642.6 Da    PI: 6.6935
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0090s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.0002593110219
                          EETTTTEEESSHHHHHHH CS
              zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                          +C++Cgk Fs++ ++  H
  Kaladp0090s0076.1.p  93 SCENCGKEFSSWKSFLEH 110
                          6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552.91638IPR015880Zinc finger, C2H2-like
PfamPF139126.1E-41638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SMARTSM0035520092112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.46E-8228251No hitNo description
SMARTSM003550.13229251IPR015880Zinc finger, C2H2-like
PfamPF139121.5E-9229253IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076229256IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576678.46E-8323350No hitNo description
PfamPF139122.7E-13327351IPR007087Zinc finger, C2H2
PROSITE profilePS501579.369328350IPR007087Zinc finger, C2H2
SMARTSM003550.44328350IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280330350IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MACSPHHDHH EQNFKHFCKI CKKGFGCGRA LGGHMRAHGI GDESGLMDDD EDEDQISDWE  60
DKLAETSNPA SPPVNKRMYS LRTNPNRLKT CRSCENCGKE FSSWKSFLEH GKCGGESEDD  120
AESPVSSPES ESGVRRGMGW SKRKSSLRAN FGNFNSSCPS SEEEDLAHCL MMLSSATVDH  180
SYQAEPDHES CASASKDDQL NNSMMRSFVA PNRISIGIKA KSIATKGLFE CKACKKVFNS  240
HQALGGHRAS HKKVKGCFAA RLDDNHRPPP ADEETMLNNS EDDEQQFTGI PVSKVNTPYS  300
LQLATNSSSL TAAHHFAPSS SKRKSKVHEC SICHRVFSSG QALGGHKRCH WITSNNGGQD  360
PTLLSKFAHF DHHLASKLAQ TGPIDLNLPA TSDMNHRREA DKQQPVTRNA LSFELSAENY  420
FLQINELKGN DEVMMMITSN QKNNNNQCHN NNVEEDDADS KVRLAKLSEL KDMKVGGEGS  480
SSSWLQVGLA SSTTDNVVAI GDDNTAG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511650.11e-163zinc finger protein ZAT1
TrEMBLB9RD611e-161B9RD61_RICCO; Uncharacterized protein
STRINGXP_002511650.11e-162(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.11e-26C2H2-like zinc finger protein