PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0089s0088.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 213aa MW: 23491.5 Da PI: 7.4692 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128 | 4.2e-40 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC++dC++apyf++eq p++fa++hk+FGasnv+kll ++p ++r +++ +++yeA+ar+rdPvyG+v++i++lqqq++ Kaladp0089s0088.1.p 8 PCGACKFLRRKCTTDCIFAPYFCSEQgPARFAAIHKVFGASNVSKLLLHVPVQDRCETVVTIAYEAQARLRDPVYGCVAHIFALQQQVAI 97 7*************************99************************************************************** PP DUF260 90 lkaelallkeel 101 l+a+l+++k++l Kaladp0089s0088.1.p 98 LQAQLVQVKAQL 109 *******99885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.819 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-38 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 213 aa Download sequence Send to blast |
MASGVGSPCG ACKFLRRKCT TDCIFAPYFC SEQGPARFAA IHKVFGASNV SKLLLHVPVQ 60 DRCETVVTIA YEAQARLRDP VYGCVAHIFA LQQQVAILQA QLVQVKAQLA SNVMGNRNNA 120 TAHNMSNNNN TPSSEWPGLI YTLPNLQAYN NNHHHSVSPQ SSIESMEQNN GGVGDMKEET 180 LPYEIGSEQK KTRSYNDQLN ELQELAFRMM RD* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-35 | 4 | 116 | 7 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-35 | 4 | 116 | 7 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00309 | DAP | Transfer from AT2G42430 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021614317.1 | 1e-87 | LOB domain-containing protein 16 | ||||
Swissprot | Q9SLB7 | 1e-68 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A2C9VW15 | 3e-86 | A0A2C9VW15_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_023367m | 9e-88 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-55 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0089s0088.1.p |