PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0053.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 296aa    MW: 32213 Da    PI: 7.539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0053.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-10197241144
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHH.HHTTTS-HHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar.tmgkgRtlkqcksrw 44 
                          r++WT eEd+ l+ avk+ G g+W+ I r  ++  Rt+ q+  rw
  Kaladp0089s0053.3.p 197 RNPWTDEEDKELIAAVKKCGEGNWANILRgDFNGERTASQLSQRW 241
                          79*************************983344578888888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.379192249IPR017930Myb domain
SuperFamilySSF466892.69E-13194246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-14194246IPR009057Homeodomain-like
SMARTSM007171.9E-10196247IPR001005SANT/Myb domain
PfamPF002492.6E-8197241IPR001005SANT/Myb domain
CDDcd116601.41E-15199246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTHKGSDSKR RKVEITLEDV YSCVLQRYTP SAVITLCLEI AQACGNNKID WKQLAKRTST  60
GITNAREYQM LWRHLAYGHH LNEKIEEGAE LLDDESDLEI DLEAVPQGNA EDLAGAHASV  120
QVLLASGPPC NSRMPNTLAA DANLAPNEKQ NGSTSKNAQI AVNGSLQTSS QNHLPQPYKS  180
IDGLDANGRN LPFRKKRNPW TDEEDKELIA AVKKCGEGNW ANILRGDFNG ERTASQLSQR  240
WAILKRQNKN LGIGGSNING QQLSQAHLAT RNALSAALNM PITLTSSVAT SSSFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010664416.13e-89PREDICTED: uncharacterized protein LOC100245507 isoform X1
RefseqXP_010664417.12e-89PREDICTED: uncharacterized protein YMR317W isoform X2
TrEMBLF6H1407e-88F6H140_VITVI; Uncharacterized protein
STRINGVIT_18s0001g07620.t011e-88(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.22e-46MYB_related family protein