PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0043.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 425aa    MW: 46386.5 Da    PI: 6.5072
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0043.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH322.2e-10271319355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Kaladp0089s0043.1.p 271 NSHSLAERVRREKISERMKLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 319
                          58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-17266336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-11266323No hitNo description
PROSITE profilePS5088815.586268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-17269335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7271319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10274324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MGVGGDGEVD LGFHQNSNKG FMSCSTSGMN TNPVPNKAAG TAMSSIPMFK SSAGSDPFFG  60
THWDPLLAIN HSENFGGGSS MVSHCGYANP PYPIHNQGMS STHLVQYPSS DSTLVDLPKI  120
QHFGSGNFSD MAGLYGLPAL GATGTSSCYQ NYLPNQEVVT HRHHNTDGAR SQDDCQVSEE  180
RALEASPNGK RRRRSIESAS ELNSNKVTEG EQQKDMSEGS FDQPGEPDDK KQSQILKNKP  240
SSKQAKNNSP TEENTKDTYI HVRARRGQAT NSHSLAERVR REKISERMKL LQELVPGCNK  300
ITGKAVMLDE IINYVQSLQQ QVEFLSMKLA TVNPELDIDI ERMLSKDILQ SRGDNTVMLG  360
ISPGIRNSHP YPHAMLQSGM QNSATEYHHM PQNGWNNELQ SLLQMGFCSN PAVDNQGLDG  420
CSKP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021828015.11e-155transcription factor bHLH74 isoform X2
TrEMBLA0A251RBG41e-152A0A251RBG4_PRUPE; Uncharacterized protein
STRINGXP_008220406.11e-152(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-78bHLH family protein