PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0089s0019.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WOX
Protein Properties Length: 287aa    MW: 32091.2 Da    PI: 10.2801
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0089s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.43.9e-21113172357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t+eq+ +Le l++   r+p+a+++e++++kl    +++ ++V++WFqN++a+e++
  Kaladp0089s0019.1.p 113 TRWNPTQEQIGILEMLYKGgMRTPNAHQIEQITHKLakygKIEGKNVFYWFQNHKARERQ 172
                          7*****************99**************************************97 PP
2Wus_type_Homeobox116.11.7e-37113173464
    Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          tRW+Pt+eQi iLe+lyk G+rtPn+++i++it++L++yGkie+kNVfyWFQN+kaRerqk
  Kaladp0089s0019.1.p 113 TRWNPTQEQIGILEMLYKGGMRTPNAHQIEQITHKLAKYGKIEGKNVFYWFQNHKARERQK 173
                          8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.42E-11108176IPR009057Homeodomain-like
PROSITE profilePS5007110.009108173IPR001356Homeobox domain
SMARTSM003891.8E-5110177IPR001356Homeobox domain
PfamPF000468.1E-19113172IPR001356Homeobox domain
CDDcd000863.95E-4113173No hitNo description
Gene3DG3DSA:1.10.10.603.4E-7114172IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGSSSMKVHQ FPRGFWDHII HPAQQPSSLP SSFSSESSSS AAAVCKRLRS PAPKMAAHAS  60
NHNNSTATSL DLKSFIRPDS GPRRLSASSD RNLTCTKHDQ QPDAQVETHP GGTRWNPTQE  120
QIGILEMLYK GGMRTPNAHQ IEQITHKLAK YGKIEGKNVF YWFQNHKARE RQKIKRERLG  180
RTPHSPAPMI PLPLPVPVPA APVTVKASNN NIKTMLNMDM AAKEEHLVCV SEGVQKRRCR  240
SWTFDEEAND DREAAWNNSR SCRSDDEGSG CRTLQLFPLH PESRKR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012466614.12e-73PREDICTED: WUSCHEL-related homeobox 4-like
TrEMBLA0A0D2M9H24e-72A0A0D2M9H2_GOSRA; Uncharacterized protein
TrEMBLA0A498HTA14e-72A0A498HTA1_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.13e-58WUSCHEL related homeobox 4