PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0045.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 234aa    MW: 25981.7 Da    PI: 9.3817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0045.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.52.8e-49161401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppG+rF+Ptdeelv +yL+kk+ + +l++ ++i+ev+++k++PwdLp     +++  yfFs+r+ ky++g+r+nrat sgyWkatg d+
  Kaladp0088s0045.1.p  16 LPPGVRFQPTDEELVFQYLAKKIFHLPLPA-SIIPEVEVCKSDPWDLPG---DKSETRYFFSSREAKYPNGSRSNRATGSGYWKATGIDR 101
                          79****************************.89***************2...345677******************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++ ++++ glkktLvfy+g+ +kg++tdW+mheyrl
  Kaladp0088s0045.1.p 102 KIMCRgRNQVGGLKKTLVFYQGKPNKGTRTDWIMHEYRL 140
                          ****95556678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-5412174IPR003441NAC domain
PROSITE profilePS5100552.99516174IPR003441NAC domain
PfamPF023651.6E-2417140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENQVAIVMN GVVVRLPPGV RFQPTDEELV FQYLAKKIFH LPLPASIIPE VEVCKSDPWD  60
LPGDKSETRY FFSSREAKYP NGSRSNRATG SGYWKATGID RKIMCRGRNQ VGGLKKTLVF  120
YQGKPNKGTR TDWIMHEYRL DSALADLLMK RSAGPQAAVT AQIEKWVLCR IFLKKRAGGD  180
ANKLTDEVRR GLARPILCDL NEAPTSSSCG SSGLTDESLN NEAEVESSHV SRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-471417513169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881782.18e-85NAC domain-containing protein 83-like
RefseqXP_015902286.18e-85NAC domain-containing protein 83-like
SwissprotQ9FY939e-76NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A0B2P6893e-81A0A0B2P689_GLYSO; NAC domain-containing protein 29
TrEMBLB2ZGQ73e-81B2ZGQ7_SOYBN; NAC domain protein
STRINGLus100018091e-82(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.14e-78NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]