PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0129.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HRT-like
Protein Properties Length: 401aa    MW: 45622.6 Da    PI: 9.8705
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0129.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like57.81.8e-18288318131
             HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          iCGviledG++C++ Pv+ RKRC+eHKG+Ri
  Kaladp0085s0129.1.p 288 ICGVILEDGTPCRKLPVPTRKRCQEHKGRRI 318
                          8*****************************7 PP
2HRT-like42.61e-13357386231
             HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                          C v l+dG  C+rqP  gRKRC+eHKGm++
  Kaladp0085s0129.1.p 357 CAVELGDGKKCSRQPNVGRKRCQEHKGMKV 386
                          99**************************97 PP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDINNTSTEI QKRIRWPVLI GSMTTIYNMI LIGPSDWEDH SLGKEGATRY RIHNLPKGFE  60
PGVYELGIAV SHSGLGRDIR KLDPTRIVVV YLGQAGNVRS RLQSYGQSGS HLVQKNPISK  120
SNCHWDDNIQ NGSGLFDDIF SRGYPIVFRW APMASKKEAV ETEARLLEKF DYAWNKEYNN  180
ARRPDDIYKK LDKVAASTIW FSKITRILQK KVGIRIKSSN HHPIRQDNQP KSIRHNHLFS  240
GVLNFSRSRP RYNLGNPDTG DSSCELNCYY EPETGDMENS PGKVGLQICG VILEDGTPCR  300
KLPVPTRKRC QEHKGRRIHV MYNAIREENI ASTIREEKNN ANVEHNTQNN QDQRSACAVE  360
LGDGKKCSRQ PNVGRKRCQE HKGMKVNSLV TKQDKFNNSY *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021907781.11e-104LOW QUALITY PROTEIN: protein EFFECTOR OF TRANSCRIPTION 2-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-73effector of transcription2