PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0085s0009.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 344aa    MW: 38813.4 Da    PI: 7.0338
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0085s0009.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.4e-49121451128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhP+deel+v+yL++kv++++++   +i+++d+y ++PwdLp+k+  +e+ew+fFs+rd+ky++g r+nra++sgyWkatg+dk
  Kaladp0085s0009.1.p  12 LPPGFRFHPSDEELIVHYLQNKVNSRPVPG-CIIADIDLYMFNPWDLPSKALFGENEWFFFSPRDRKYPNGARPNRAAASGYWKATGTDK 100
                          79*************************999.78***************8777899*********************************** PP

                  NAM  91 evlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++       + e++g+kk Lvfy gr p+g+ktdW+m+eyrl
  Kaladp0085s0009.1.p 101 PIMRNnaasscgGVETIGVKKGLVFYVGRPPTGSKTDWIMNEYRL 145
                          ****866666655555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-5910174IPR003441NAC domain
PROSITE profilePS5100556.95612175IPR003441NAC domain
PfamPF023655.0E-2613145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDEKSTHLPI QLPPGFRFHP SDEELIVHYL QNKVNSRPVP GCIIADIDLY MFNPWDLPSK  60
ALFGENEWFF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PIMRNNAASS CGGVETIGVK  120
KGLVFYVGRP PTGSKTDWIM NEYRLIDSIS KWGSHKRKGS SMRLDDWVLC RVRQRGSNSR  180
NVWDDPNGLT ANDRSASASS FNTRKSEMQD FLTDTNHNLV GWPLLNSITA TSQDDICSMT  240
SSLTHEEINN AMLSPNLKRK FAEDHLHDDC SFMPWPIKKI HSASRDQKNE KEEILSTSNS  300
SHNIAPASNW LTDANALCQF YCLDDEWNII SENCQALTGF SRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-6431846173Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028776005.12e-93NAC domain-containing protein 2-like
TrEMBLW1P5U32e-88W1P5U3_AMBTC; Uncharacterized protein
STRINGERN052224e-89(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.12e-76NAC domain containing protein 47