PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0084s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 33279.1 Da PI: 5.5589 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57 | 4.5e-18 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede+l+ ++ ++G g+W++ ar+ g++Rt+k+c++rw+++l Kaladp0084s0050.1.p 8 KGPWSEQEDEQLLSYISKYGHGHWEAMARKAGLNRTGKSCRLRWLNHL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 45.8 | 1.4e-14 | 61 | 104 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++++++++ ++G++ W++Ia++++ gR+++++k++w++ Kaladp0084s0050.1.p 61 RGNITLQEQLIILQLHSRWGNR-WAKIAECLP-GRSDNEIKNYWRT 104 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.824 | 3 | 59 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-30 | 5 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-17 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-16 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-22 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.51E-12 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 16.494 | 60 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-13 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-13 | 61 | 104 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 63 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.62E-9 | 65 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MATGGVKKGP WSEQEDEQLL SYISKYGHGH WEAMARKAGL NRTGKSCRLR WLNHLRPGVR 60 RGNITLQEQL IILQLHSRWG NRWAKIAECL PGRSDNEIKN YWRTRVQKQA KQLRCDVNSH 120 QFIEIVQHVW MPQLAERVQT QCKSSPTITQ ELECCETSSI SCGKLSNDSS NTHSDAAPLS 180 IPCQLSDPSS SHAYNNDSNR HVSDAADSDP AWRLGAGLEA DTYQMNVEKE TISCEDYCPW 240 SEQGLEVDKS QELLETAAWY DHDYCYSLEN LLNDDDMMIL CQQFLFDDHR A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 8 | 110 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020207547.1 | 1e-72 | transcription factor MYB2 | ||||
STRING | XP_007163206.1 | 2e-69 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 5e-62 | myb domain protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0084s0050.1.p |