PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0082s0110.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | ERF | ||||||||
Protein Properties | Length: 179aa MW: 19850.4 Da PI: 8.1282 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.5 | 2.4e-16 | 17 | 62 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 y+GVr ++ +g+Wv+eIr p++ r r++lg+f ae+Aa+a++ a ++ Kaladp0082s0110.1.p 17 YRGVRMRS-WGKWVSEIRQPRK---RSRVWLGTFPNAEMAARAHDVASLA 62 9****998.**********954...5*******************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.7E-11 | 15 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-20 | 16 | 74 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-30 | 16 | 74 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 16 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.379 | 16 | 73 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.14E-29 | 17 | 75 | No hit | No description |
PRINTS | PR00367 | 3.1E-10 | 17 | 28 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 39 | 55 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
AKEERRGGRS DGKPPAYRGV RMRSWGKWVS EIRQPRKRSR VWLGTFPNAE MAARAHDVAS 60 LAFKSKSAHL NFPHLVQHLP QHASLLPSHI RAAASKAAAM THLTSCPPTQ VKPAELSDDH 120 SPAEAVMSWS ADQEAQQGSY WNEMGSELVE LPSLAESEAL QRCLWDELRI MDSDGCWV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 7 | 74 | 4 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013626957.1 | 1e-41 | PREDICTED: ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | A0A078I7C6 | 2e-40 | A0A078I7C6_BRANA; BnaA08g12010D protein | ||||
TrEMBL | A0A0D3BLR5 | 2e-40 | A0A0D3BLR5_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A397ZUK8 | 2e-40 | A0A397ZUK8_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P6BQJ9 | 2e-40 | A0A3P6BQJ9_BRACM; Uncharacterized protein | ||||
STRING | Bo3g171090.1 | 4e-41 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32800.1 | 1e-36 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0082s0110.1.p |