PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0079s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25949.7 Da PI: 4.4153 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.6 | 5.8e-20 | 34 | 87 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++ql++Le+ Fe ++++ e++ +LA +lgL+ rqV vWFqNrRa++k Kaladp0079s0160.1.p 34 KKRRLRPHQLKALERSFEAENKLESERKVQLAFELGLDPRQVAVWFQNRRARWK 87 556899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 119.2 | 2.3e-38 | 34 | 123 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl +q+k+LE+sFe+e+kLe+erKv+la eLgl+prqvavWFqnrRAR+ktkqlE+d++ L++ayd l+++ +++++++e+L ++ Kaladp0079s0160.1.p 34 KKRRLRPHQLKALERSFEAENKLESERKVQLAFELGLDPRQVAVWFQNRRARWKTKQLERDFNLLQSAYDDLRQNYDAVKRDNETLILQI 123 9***********************************************************************************998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-20 | 27 | 91 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 29 | 89 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-17 | 32 | 93 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.00E-16 | 34 | 90 | No hit | No description |
Pfam | PF00046 | 2.0E-17 | 34 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 36 | 95 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 60 | 69 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 64 | 87 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 69 | 85 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.3E-12 | 89 | 130 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MMKSSGSKRE FDSDVALEFE EDEEFMEGSA QPDKKRRLRP HQLKALERSF EAENKLESER 60 KVQLAFELGL DPRQVAVWFQ NRRARWKTKQ LERDFNLLQS AYDDLRQNYD AVKRDNETLI 120 LQIGEMKQKL MVESGSSEKI GEGHFGPSFN YETAFHNNVN VFSSDSATSG MQSEENNSFN 180 GVVSSCGIPW TVEDAPSLAM WPADTYSFLA DEEPDLMFDW YCQNP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 81 | 89 | RRARWKTKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013623152.1 | 4e-42 | PREDICTED: homeobox-leucine zipper protein ATHB-16-like | ||||
TrEMBL | A0A443PGU0 | 8e-41 | A0A443PGU0_9MAGN; Homeobox-leucine zipper protein ATHB-6-like protein | ||||
STRING | Bo3g152870.1 | 1e-41 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-41 | homeobox protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0079s0160.1.p |