PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0076s0363.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 677aa    MW: 73237.9 Da    PI: 6.9283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0076s0363.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000227496123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ Cgk F++   L  H+r+H
  Kaladp0076s0363.1.p 74 HVCTLCGKGFRSGKALGGHMRVH 96
                         79*******************99 PP
2zf-C2H211.50.00096148166321
                          ETTTTEEESSHHHHHHHHH CS
              zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                          Cp+C + F+++  L  H+r
  Kaladp0076s0363.1.p 148 CPICRRDFPSNKALFGHMR 166
                          ******************8 PP
3zf-C2H212.50.00044464486123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ C+k+Fs++  L  H ++H
  Kaladp0076s0363.1.p 464 YKCTTCNKTFSSHQALGGHKSSH 486
                          9***************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-47397IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.21974101IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-87496No hitNo description
SMARTSM003550.00637496IPR015880Zinc finger, C2H2-like
PfamPF139124.9E-87496IPR007087Zinc finger, C2H2
PROSITE patternPS0002807696IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-8141168No hitNo description
SMARTSM003550.089146168IPR015880Zinc finger, C2H2-like
PfamPF139122.9E-6147170IPR007087Zinc finger, C2H2
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-7463486No hitNo description
PfamPF139123.5E-9463487IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.323464491IPR007087Zinc finger, C2H2
SMARTSM003550.015464486IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280466486IPR007087Zinc finger, C2H2
SuperFamilySSF576673.6E-7534561No hitNo description
SMARTSM003553.1539561IPR015880Zinc finger, C2H2-like
PfamPF139129.8E-8539563IPR007087Zinc finger, C2H2
PROSITE patternPS000280541561IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MSKDREDRLS RPLPDSEKKT VSMSDREPES GKSRSSATSG GGKLKIKIKL PERRSCESDR  60
IRDQDAVKEE EEEHVCTLCG KGFRSGKALG GHMRVHAKRD RSDQLKTTHH GIDPAAAAVY  120
SSDMYDEEEV KGSCDDELQI KGGRKPICPI CRRDFPSNKA LFGHMRCHPE RTWRGIQPPV  180
YSSSSTVSDD KSDNDGGGDH HFEKGVVDLE KDLLNFGWGA KDRRDREGTV KSFAPSQTGC  240
QIVFGNTSVQ SIAPEQAVGV QSLILLSRGG VDKKRREIKS RPLPAGPGIR DSVNFTRKLK  300
LCGAGAVAAE SRGRADHDSE RGKKRKTSQV LAAEEVSILT DSSDKRFKFA NEKDDEGSAA  360
GVQDLIMESN PLHQLTARRP MVSAADGGAD VISSLDQKDD ATPHGYNAAD LIETKKMQKV  420
RKYLMITDLK PMTGNLPHSS PVNPARCQVV NMEVPVPVPD NERYKCTTCN KTFSSHQALG  480
GHKSSHNKLR NPQSLIRNNE LPHSDNVTAQ VGESSNAEAG ASHNSRIIMA AATHDHAIHQ  540
CNVCFKIYPT GQALGGHKRL HCSLIINKAP PLPAPSNMVI SEPAEAAPLP PPPSIIIPEP  600
AEEAAHSPPA APVAQTSDNV RGALCRFDLN ELPALEDEDD EDVIIQPADN TAAAQPQEEV  660
GDDHAAAHHG PGSPPA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.17e-18C2H2 family protein