PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0075s0012.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 385aa    MW: 42778.2 Da    PI: 6.5737
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0075s0012.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52231492128
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                          ppGfrFhPtdeel+++yL+ kv + +l     i+evd++k+ePwdLp  +k +++ewyf+s rd+ky+tg r+nrat +gyWkatgkdke
  Kaladp0075s0012.1.p  23 PPGFRFHPTDEELITFYLASKVFHGSLCS-VDIAEVDLNKCEPWDLPDVAKMGKREWYFYSLRDRKYPTGLRTNRATGTGYWKATGKDKE 111
                          9************************9766.34***************88888999*********************************** PP

                  NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++ +g+ +g+kktLvfy grap+gekt+Wvmheyrl
  Kaladp0075s0012.1.p 112 IHNAaTGAMIGMKKTLVFYLGRAPRGEKTKWVMHEYRL 149
                          **9878899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-6217171IPR003441NAC domain
PROSITE profilePS5100557.47822171IPR003441NAC domain
PfamPF023651.8E-2723149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MLLGIEDVLC ELASEEITGH GYPPGFRFHP TDEELITFYL ASKVFHGSLC SVDIAEVDLN  60
KCEPWDLPDV AKMGKREWYF YSLRDRKYPT GLRTNRATGT GYWKATGKDK EIHNAATGAM  120
IGMKKTLVFY LGRAPRGEKT KWVMHEYRLH GDFFFRAAAK EEWVICRIYH KTGDKKNMLL  180
NEVAAGSQLQ PLLAPGAYMT SSTTRNESFL PQLIDSQLMS SQFLHNQTSG FPAESVSKEA  240
QHRPPLTYNN NLFNFQPESS FYPASAAEHT SLSSMLIKSL LSSEDPRTLK QANSNDASGH  300
VKAEPSFQGL LPGVDSLEWF HELQQAASTQ FNNPPLLSNS GGESRSAYVG QVADGAHLNR  360
AGCLQMVVDP NYRIPNGEAW ALDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-512317416171Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313889.11e-112protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012444453.11e-112PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_012444454.11e-112PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A1R3H2D71e-111A0A1R3H2D7_COCAP; No apical meristem (NAM) protein
STRINGGorai.009G186000.11e-112(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-97NAC family protein